ViewGene
Locus Name:
GeneID:
Location:

GeneID:4973
TrivialName: PA14_43630
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43630
PAO1 Ortholog Locus:PA1615
Sequence Length:342
Protein Length:113
Start: 3883715
Stop: 3883374
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05004.1|AE004589_7 (AE004589) probable lipase [Pseudomonas aeruginosa PAO1]
Identities = 112/113 (99%), Positives = 113/113 (100%)
Sequence:
ATGTCCGCAGACCCGCAAGCACGCGAATCGATCGCCATCCGCATCCTCTGGATGCTGCTGTTCGTCCTGGTC
TGGCAGGTCGCCGAACTGCTCCTCGGGGCGGTGGTGGTGATCCAGCTGGTCTACCGACTGATCTACGGCGCG
CCGAACGGCAGCCTGATGGCTTTCGGCGATAGCCTCAGCCAATACCTGGCGCAGATCGGCCGTTTTGGTACC
TTCCACAGCGACGAGAAACCCTGGCCGTTCGCCGACTGGCCGAGCGCCCGCGCCGCCGAGGGCGAGGCCGCC
CACAGCGTGCCGCCCGCCGCGCACCCGGCGCGCGACGAAGAGCCGAAGTTGTGA
Translation:
MSADPQARESIAIRILWMLLFVLVWQVAELLLGAVVVIQLVYRLIYGAPNGSLMAFGDSLSQYLAQIGRFGT
FHSDEKPWPFADWPSARAAEGEAAHSVPPAAHPARDEEPKL*
AnnotationID:4978GeneID:4973
AnnotatorUID: diggins
Modification Date/Time: 2005-05-18 13:01:26
Gene Name:
Confidence Code:3
GeneProduct:putative lipase
Cell Localization:()
Synonyms:PA1615
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):fatty acid and phospholipid metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD84481.1| (BX321858) possible lipase [Nitrosomonas europaea ATCC 19718]
          Length = 116

Score = 58.5 bits (140), Expect = 7e-09
Identities = 28/75 (37%), Positives = 46/75 (61%)






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9946




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27087




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4973
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7376
                           PA1615_tr
                           translation of PA1615
                           113
                           99.11
                           99.99
                           0
                           585.0
     

     
     
191232
                           gb|AAG05004.1|AE004589_7
                           (AE004589) probable lipase [Pseudomonas aeruginosa PAO1]
                           113
                           99.11
                           99.99
                           0
                           585.0
     

     
     
191233
                           gb|AAN69749.1|AE016611_7
                           (AE016789) conserved hypothetical protein [Pseudomonas putida KT2440]
                           115
                           73.04
                           88.69
                           2
                           468.0
     

     
     
191234
                           gb|AAO55730.1|
                           (AE016863) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           117
                           69.23
                           79.48
                           7
                           438.0
     

     






      

          
GC ORFID: 47975How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1615Glimmer Score: 

          
Start: 1070194Stop: 1070535

          
Length: 342


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1615 translation of PA1615Homolog Bit Score 229.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1009 (ORF: BLASTX 172.0), t_PA1615 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCGCAGACCCGCAAGCACGCGAATCGATCGCCATCCGCATCCTCTGGATGCTGCTGTTCGTCCTGGTC 
TGGCAGGTCGCCGAACTGCTCCTCGGGGCGGTGGTGGTGATCCAGCTGGTCTACCGACTGATCTACGGCGCG 
CCGAACGGCAGCCTGATGGCTTTCGGCGATAGCCTCAGCCAATACCTGGCGCAGATCGGCCGTTTTGGTACC 
TTCCACAGCGACGAGAAACCCTGGCCGTTCGCCGACTGGCCGAGCGCCCGCGCCGCCGAGGGCGAGGCCGCC 
CACAGCGTGCCGCCCGCCGCGCACCCGGCGCGCGACGAAGAGCCGAAGTTGTGA