ViewGene
Locus Name:
GeneID:
Location:

GeneID:4972
TrivialName: PA14_46340
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46340
PAO1 Ortholog Locus:PA1398
Sequence Length:342
Protein Length:113
Start: 4124591
Stop: 4124250
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04787.1|AE004569_5 (AE004569) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 112/113 (99%), Positives = 112/113 (99%)
Sequence:
ATGCGTAGCCCGCTTGCCACGATCGCCTGCGCCTGCCTGCTGCTCGGCGGCTGCTCCAAGTCCGCCGAGGAC
AGCGCCAACCCGTTGCTGGGCAAGGATGCCGAGTGCCTCGAACTGTTCGCCCGCAGCAATGCGCTGTACTGC
GACATCCGCGAGGACGAACGCGAATCCCAGGCGAAGGGTACGCCGCGCCGGCACACCGACTACGAGGTAGCC
GATGCCGCCTACCTGCTCAAGGCCACCGGGGAGCGCTGCGCGATCGATACGACCTATGTCACGGAGTGTTCG
GCGAAGGCCGGGCAGTGGCTGCAGAAGGCCCGCGCCAAGGCGGCGAAGCCCTAG
Translation:
MRSPLATIACACLLLGGCSKSAEDSANPLLGKDAECLELFARSNALYCDIREDERESQAKGTPRRHTDYEVA
DAAYLLKATGERCAIDTTYVTECSAKAGQWLQKARAKAAKP*
AnnotationID:4977GeneID:4972
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 21:09:07
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1398
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9944




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27085




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4972
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7375
                           PA1398_tr
                           translation of PA1398
                           113
                           99.11
                           99.11
                           0
                           585.0
     

     
     
191231
                           gb|AAG04787.1|AE004569_5
                           (AE004569) hypothetical protein PA1398 [Pseudomonas aeruginosa PAO1]
                           113
                           99.11
                           99.11
                           0
                           585.0
     

     






      

          
GC ORFID: 47974How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1398Glimmer Score: 

          
Start: 829318Stop: 829659

          
Length: 342


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1398 translation of PA1398Homolog Bit Score 229.0

          
Other Homologs:  t_PA1398 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTAGCCCGCTTGCCACGATCGCCTGCGCCTGCCTGCTGCTCGGCGGCTGCTCCAAGTCCGCCGAGGAC 
AGCGCCAACCCGTTGCTGGGCAAGGATGCCGAGTGCCTCGAACTGTTCGCCCGCAGCAATGCGCTGTACTGC 
GACATCCGCGAGGACGAACGCGAATCCCAGGCGAAGGGTACGCCGCGCCGGCACACCGACTACGAGGTAGCC 
GATGCCGCCTACCTGCTCAAGGCCACCGGGGAGCGCTGCGCGATCGATACGACCTATGTCACGGAGTGTTCG 
GCGAAGGCCGGGCAGTGGCTGCAGAAGGCCCGCGCCAAGGCGGCGAAGCCCTAG