ViewGene

Locus Name:
GeneID:
Location:

GeneID:4971
TrivialName: PA14_48150
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48150
PAO1 Ortholog Locus:PA1244
Sequence Length:342
Protein Length:113
Start: 4286195
Stop: 4286536
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04633.1|AE004554_1 (AE004554) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 113/113 (100%), Positives = 113/113 (100%)
Sequence:
GTGACTCTCAGAAACGGAGTACCCAGCATGACGAAGGATGAAAAGGAAAAGACCCACGTCGACGCAATCATC
GAACGCTACAAGGACCTGATGGTCGAGATTCCCCCCGCCGACCGGCAACCCGGTCTCTCCCTGCTCTGGCCG
GTTCCCGCCCAGCCCGCCATCGACAAGGGCGTCCGCCAGGCCGAGAACTGGCTTGCCGACCAGATCGAAGGC
CAGCTCTGGACCGCCTTCGCCTTCGGCCGCGACAGCCTGCCCACACCGATGCAGAAGACCGCCTTCGAAGTG
GCCTTCCTGACGCGCCTGCAGCAGCGCCTGGTAGCCGCTCGACGTTCCGGTTGA
Translation:
MTLRNGVPSMTKDEKEKTHVDAIIERYKDLMVEIPPADRQPGLSLLWPVPAQPAIDKGVRQAENWLADQIEG
QLWTAFAFGRDSLPTPMQKTAFEVAFLTRLQQRLVAARRSG*
AnnotationID:4976GeneID:4971
AnnotatorUID: diggins
Modification Date/Time: 2005-02-22 09:09:27
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1244
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:15226
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27083
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4971

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7374 PA1244_tr translation of PA1244 113 99.99 99.99 0 585.0
191230 gb|AAG04633.1|AE004554_1 (AE004554) hypothetical protein PA1244 [Pseudomonas aeruginosa PAO1] 113 99.11 99.99 0 582.0
GC ORFID: 47973How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1244Glimmer Score:
Start: 667713Stop: 667372
Length: 342
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1244 translation of PA1244Homolog Bit Score 229.0
Other Homologs: t_PA1244 (ORF: GLIMMER)
GC ORF Sequence
GTGACTCTCAGAAACGGAGTACCCAGCATGACGAAGGATGAAAAGGAAAAGACCCACGTCGACGCAATCATC
GAACGCTACAAGGACCTGATGGTCGAGATTCCCCCCGCCGACCGGCAACCCGGTCTCTCCCTGCTCTGGCCG
GTTCCCGCCCAGCCCGCCATCGACAAGGGCGTCCGCCAGGCCGAGAACTGGCTTGCCGACCAGATCGAAGGC
CAGCTCTGGACCGCCTTCGCCTTCGGCCGCGACAGCCTGCCCACACCGATGCAGAAGACCGCCTTCGAAGTG
GCCTTCCTGACGCGCCTGCAGCAGCGCCTGGTAGCCGCTCGACGTTCCGGTTGA