ViewGene

Locus Name:
GeneID:
Location:

GeneID: 4970

TrivialName: PA14_59570

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_59570

PAO1 Ortholog Locus:

Sequence Length: 336

Protein Length: 111

Start: 5301490

Stop: 5301825

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAP84185.1| (AY273869) transposase [Pseudomonas aeruginosa] Identities = 111/111 (100%), Positives = 111/111 (100%)

Sequence:

ATGATCCGCATCGATGCGATCTGGCTAGCCACCGAACCGATGGACATGCGCGCCGGCACCGAGACGGCATTA
GCCCGGGTAATTGCGGTGTTCGGTGCGGCGAAGCCGCACTGCGCTTATCTGTTCGCCAATCGCCGGGCTAAC
CGAATGAAAGTGCTGGTGCACGATGGCGTGGGCATCTGGCTTGCCGCGCGTCGACTGAACCAAGGCAAGTTC
CACTGGCCCGGCATTCGCCATGGCTGCGAGGTCGAACTCGACAGCGAACAACTCCAGGCCTTGGTGCTGGGC
CTGCCGTGGCAGCGCGTCGGCACAGGCGGTGTGATCAGCATGCTGTAA

Translation:

MIRIDAIWLATEPMDMRAGTETALARVIAVFGAAKPHCAYLFANRRANRMKVLVHDGVGIWLAARRLNQGKF
HWPGIRHGCEVELDSEQLQALVLGLPWQRVGTGGVISML*

AnnotationID:4975 GeneID:4970

AnnotatorUID: diggins

Modification Date/Time: 2006-01-29 11:11:48

Gene Name:

Confidence Code: 3

GeneProduct: putative transposase

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (22) Related to phage, transposon, or plasmid

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies): DNA replication, recombination, modification and repair

EC Number:

Status: ACTIVE

Pathway:

Homology:

>gb|AAN70014.1|AE016640_2 (AE016790) ISPpu14, transposase Orf2 [Pseudomonas putida KT2440]
          Length = 111

 Score =  228 bits (580), Expect = 7e-60
 Identities = 109/111 (98%), Positives = 110/111 (99%)

Structural Features:

Genomic Context:

Comment:

ReferenceID:9940

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:27081

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:38290

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 4970_cdd.html

URL:

Homologs By Global Alignment

Gene ID:4970

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

191221 gb|AAP84185.1| (AY273869) transposase [Pseudomonas aeruginosa] 111 99.99 99.99 0 586.0

191222 gb|AAN69574.1|AE016591_2 (AE016788) ISPpu14, transposase Orf2 [Pseudomonas putida KT2440] 111 98.19 99.09 0 580.0

191223 gb|AAN69559.1|AE016589_8 (AE016788) ISPpu14, transposase Orf2 [Pseudomonas putida KT2440] 111 98.19 99.09 0 580.0

191224 gb|AAN70014.1|AE016640_2 (AE016790) ISPpu14, transposase Orf2 [Pseudomonas putida KT2440] 111 98.19 99.09 0 580.0

191225 gb|AAN69101.1|AE016543_10 (AE016787) ISPpu14, transposase Orf2 [Pseudomonas putida KT2440] 111 98.19 99.09 0 580.0

GC ORFID: `47972`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_RL060`	Glimmer Score:
Start: `4565169`	Stop: `4565504`
Length: `336`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAA`	Truncated Stop:
Homolog: `t_RL060 111 Homolog: ORF14 / Hypothetical protein / P.syringae pv. Maculicola / plasmid pFKN (AAK49547) translation of RL060`	Homolog Bit Score `230.0`
Other Homologs: `psyr_15may02_Scaffold3_revised_gene4734 (ORF: BLASTX 207.0), t_RL060 (ORF: GLIMMER)`
GC ORF Sequence
`ATGATCCGCATCGATGCGATCTGGCTAGCCACCGAACCGATGGACATGCGCGCCGGCACCGAGACGGCATTA GCCCGGGTAATTGCGGTGTTCGGTGCGGCGAAGCCGCACTGCGCTTATCTGTTCGCCAATCGCCGGGCTAAC CGAATGAAAGTGCTGGTGCACGATGGCGTGGGCATCTGGCTTGCCGCGCGTCGACTGAACCAAGGCAAGTTC CACTGGCCCGGCATTCGCCATGGCTGCGAGGTCGAACTCGACAGCGAACAACTCCAGGCCTTGGTGCTGGGC CTGCCGTGGCAGCGCGTCGGCACAGGCGGTGTGATCAGCATGCTGTAA`