ViewGene
Locus Name:
GeneID:
Location:

GeneID:497
TrivialName: PA14_67010
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67010
PAO1 Ortholog Locus:PA5072
Sequence Length:1944
Protein Length:647
Start: 5980339
Stop: 5982282
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08457.1|AE004920_7 (AE004920) probable chemotaxis transducer [Pseudomonas aeruginosa PAO1]
Identities = 638/647 (98%), Positives = 641/647 (99%)
Sequence:
ATGTACGATTGGTGGGTTCTCCAACTGGCCAAGCTGAGCGTCAGCCGCAAGCTGATGGTCGGTTTCGGTGTC
CTCCTCGCGCTGCTTCTGCTGGTGGTGATCAGCAGCAACCGCACCCTCACGCACCAGACCGCCCTCAGCGAG
CAGCTCGCCGAAGTCGCCAGCCTGATGGAACAGGCCCAGCAAGCCGAACAAAGCCGCCTGGCATTCGAAGCC
GGCAGCGACCCGCGCCAGGCCGAGCAGGTCCGCCAGACCCTGGCCGGGATGCTCCAGCGCCTGCAGGCGCTG
CGCCACAGCGAGCTTGACCCGGCCGCCCTGGCCCACCAGGCCGAAGCCATCGAAGCCTACCGCAAGGCCTTC
GACGACCTCGCCGCAGCCGATCAGCAACGCAGCGCCGCCCGTGGTGTGCTGGTGGGCACTGCACAGCAGGCG
CTGGACAGCTTCGCCCGCCTCGAGGAACTGATGGACGCCAGCCTCGCGCAGCAGGCCGGCGACCCGCAGGCC
TTGCAACGCAGCCGTGCGGTGGCCGACCTGCACCAACAGTTGCTCATGGTGCGTTACCAGGTGCGCGGCTAC
GTCTTCGAGCGCAGCGACAAGGCCGAGCAGGCCGCGTTCGCCGCGTTCGACGCCCTCCGCCAGGCCGCCACG
ACGCTGCGAGGCCAATTGCCCGGCGAGGCCGATGCGGCGCTGGAACAGGCCATGGGCAGCCTCCAGGGCTAT
CGTGGCGGCATCGAGCAGTTCCGTGCCGGCGTCGTCCGCACGCGCCAGGCGCAGCAAGCGATGCAAAGCAGC
ACCCAGGATATGGCCCGGGCCGGCCGGACCCTCACCGAAGCCGGTCGCCAGTTGCGCGAGAGCACCGCCAGC
CGCGACCGCGCCAGCCTCTGGCTGATCGCCGCGCTGGCCCTGGCCTTCGGCTGCGTCGCCGGCTGGGCGATC
AACCGGCAGATCGTCCGGCCGCTGGACGAAGCCCTCGCGCAGGCCGAGGCCATCGCCGCCGGCGACCTCGGC
AAGCGTTCGCAGAATCCCCTGACCCTCCAGCGCCGCGACGAACTGGGCCAGTTGCAGCGAGTCATGCAGCGC
ATGGGCGACAGCCTGCGCGAGCTGGTCGGGCGGATCGGCGACGGCGTCAGCCAGTTGGCCAGCTCCGCCGAG
GAACTCTCGGCGGTCACCGAGCAGACCCGCGCCGGGGTCAACAGCCAGAAAGTGGAGACCGACCAGGTCGCC
ACCGCCATGCACGAGATGGCCGCCACCGTGCAGGACGTCGCGCGCAACGCCGAGCTGGCCTCCCAGGCCGCT
CGCCAGGCCGATGAAGAGGCGCGCCAGGGCGACGCGGTGGTCGACCAGGCGGTGACGCGCATCGAGCGCCTG
GCTACCGAAATGGACGTTTCCAGCGAAGCCATGGCGCGCCTGAAGAACGACAGCGAGCAGATCGGCAGCGTC
CTCGACGTGATCAAGTCGGTGGCCGAGCAAACCAACCTGCTGGCGCTCAACGCCGCCATCGAAGCGGCACGC
GCCGGCGACGCCGGACGCGGCTTCGCGGTGGTCGCCGACGAGGTCCGTGGCCTGGCCCAGCGCACCCAGCAG
TCCACCGCCGAGATCGAGGGCCTGATCCAGCGTCTCCAGCAGGGCGCCGGTGAAGCCGCCGAACGCCTGGAG
AACAGCCGCTCGCTGACCGCCAGCACGGTGGAACTGGCGCGCCGCGCCGGCGCCGCGCTGGACAGCATCACC
CGCACCGTCTCCGACATCCAGAACATGAACCTGCAGATCGCCACTGCCGCGGAGCAACAGAGCACGGTGGCC
GAGGAGATCAACCGCAGCGTCCTCAGCGTGCGCGACGTCGCCGAGCAGTCGGCCGCCGCCAGCGAGCAGACC
GCCGCCTCCAGCGGCGAGCTGGCGCGCCTGGGCACGCAGTTGCAGGCGCAGGTGGGACGCTTCCGCCTGTAA
Translation:
MYDWWVLQLAKLSVSRKLMVGFGVLLALLLLVVISSNRTLTHQTALSEQLAEVASLMEQAQQAEQSRLAFEA
GSDPRQAEQVRQTLAGMLQRLQALRHSELDPAALAHQAEAIEAYRKAFDDLAAADQQRSAARGVLVGTAQQA
LDSFARLEELMDASLAQQAGDPQALQRSRAVADLHQQLLMVRYQVRGYVFERSDKAEQAAFAAFDALRQAAT
TLRGQLPGEADAALEQAMGSLQGYRGGIEQFRAGVVRTRQAQQAMQSSTQDMARAGRTLTEAGRQLRESTAS
RDRASLWLIAALALAFGCVAGWAINRQIVRPLDEALAQAEAIAAGDLGKRSQNPLTLQRRDELGQLQRVMQR
MGDSLRELVGRIGDGVSQLASSAEELSAVTEQTRAGVNSQKVETDQVATAMHEMAATVQDVARNAELASQAA
RQADEEARQGDAVVDQAVTRIERLATEMDVSSEAMARLKNDSEQIGSVLDVIKSVAEQTNLLALNAAIEAAR
AGDAGRGFAVVADEVRGLAQRTQQSTAEIEGLIQRLQQGAGEAAERLENSRSLTASTVELARRAGAALDSIT
RTVSDIQNMNLQIATAAEQQSTVAEEINRSVLSVRDVAEQSAAASEQTAASSGELARLGTQLQAQVGRFRL*
AnnotationID:506GeneID:497
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 05:05:55
Gene Name:
Confidence Code:3
GeneProduct:putative methyl-accepting chemotaxis transducer
Cell Localization:()
Synonyms:PA5072
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(10) Chemotaxis
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0840,smart00283,pfam00015
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70585.1|AE016701_5 (AE016792) methyl-accepting chemotaxis transducer [Pseudomonas
           putida KT2440]
          Length = 638

 Score =  556 bits (1432), Expect = e-157
 Identities = 320/650 (49%), Positives = 436/650 (67%), Gaps = 15/650 (2%)

>gb|AAO58586.1| (AE016874) methyl-accepting chemotaxis protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 647

 Score =  514 bits (1324), Expect = e-145
 Identities = 302/642 (47%), Positives = 417/642 (64%), Gaps = 7/642 (1%)








 
Structural Features:
COG0840, Tar, Methyl-accepting chemotaxis protein 
[Cell motility and secretion / Signal transduction mechanisms]
CD-Length = 408 residues,  97.3% aligned
Score =  184 bits (467), Expect = 3e-47
Identities = 140/404 (34%), Positives = 220/404 (54%), Gaps = 7/404 (1%)

smart00283, MA, Methyl-accepting chemotaxis-like domains 
(chemotaxis sensory transducer). 
CD-Length = 262 residues, 100.0% aligned
Score =  173 bits (441), Expect = 4e-44
Identities = 105/262 (40%), Positives = 169/262 (64%)

pfam00015, MCPsignal, Methyl-accepting chemotaxis protein (MCP) signaling domain. 
CD-Length = 251 residues,  99.2% aligned
Score =  160 bits (405), Expect = 5e-40
Identities = 103/249 (41%), Positives = 156/249 (62%)






   
Genomic Context:






   
Comment:


















    ReferenceID:997




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18139




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34996




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:497_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:497
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
862
                           PA5072_tr
                           translation of PA5072
                           647
                           98.60
                           99.07
                           0
                           3057.0
     

     
     
36019
                           gb|AAG08457.1|AE004920_7
                           (AE004920) probable chemotaxis transducer [Pseudomonas aeruginosa PAO1]
                           647
                           98.60
                           99.07
                           0
                           3057.0
     

     
     
36020
                           gb|AAN70585.1|AE016701_5
                           (AE016792) methyl-accepting chemotaxis transducer [Pseudomonas putida KT2440]
                           650
                           49.23
                           66.92
                           15
                           1445.0
     

     
     
36022
                           gb|AAO58585.1|
                           (AE016874) methyl-accepting chemotaxis protein [Pseudomonas syringae pv. tomato str. DC3000]
                           660
                           48.78
                           63.93
                           35
                           1334.0
     

     
     
36024
                           gb|AAN70231.1|AE016662_7
                           (AE016791) methyl-accepting chemotaxis transducer [Pseudomonas putida KT2440]
                           668
                           48.65
                           62.87
                           50
                           1313.0
     

     






      

          
GC ORFID: 43499How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5072Glimmer Score: 

          
Start: 5244023Stop: 5245966

          
Length: 1944


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA5072 translation of PA5072Homolog Bit Score 1182.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3804 (ORF: BLASTX 509.0), psyr_15may02_Scaffold2_revised_gene3803 (ORF: BLASTX 509.0), psyr_15may02_Scaffold3_revised_gene5122 (ORF: BLASTX 498.0), psyr_15may02_Scaffold2_revised_gene4151 (ORF: BLASTX 478.0), psyr_15may02_Scaffold7_revised_gene7480 (ORF: BLASTX 457.0), psyr_15may02_Scaffold1_revised_gene818 (ORF: BLASTX 424.0), psyr_15may02_Scaffold7_revised_gene7281 (ORF: BLASTX 419.0), t_PA1646 (ORF: BLASTX 395.0), psyr_15may02_Scaffold9_revised_gene7996 (ORF: BLASTX 293.0), psyr_15may02_Scaffold11_revised_gene1792 (ORF: BLASTX 285.0), psyr_15may02_Scaffold3_revised_gene4244 (ORF: BLASTX 281.0), t_PA1608 (ORF: BLASTX 276.0), psyr_15may02_Scaffold13_revised_gene2252 (ORF: BLASTX 275.0), psyr_15may02_Scaffold1_revised_gene1081 (ORF: BLASTX 271.0), psyr_15may02_Scaffold10_revised_gene1600 (ORF: BLASTX 268.0), t_PA2652 (ORF: BLASTX 265.0), psyr_15may02_Scaffold7_revised_gene7323 (ORF: BLASTX 241.0), psyr_15may02_Scaffold1_revised_gene392 (ORF: BLASTX 236.0), psyr_15may02_Scaffold1_revised_gene618 (ORF: BLASTX 233.0), psyr_15may02_Scaffold1_revised_gene610 (ORF: BLASTX 232.0), t_PA1561 (ORF: BLASTX 223.0), psyr_15may02_Scaffold8_revised_gene7520 (ORF: BLASTX 223.0), t_PA5072 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTACGATTGGTGGGTTCTCCAACTGGCCAAGCTGAGCGTCAGCCGCAAGCTGATGGTCGGTTTCGGTGTC 
CTCCTCGCGCTGCTTCTGCTGGTGGTGATCAGCAGCAACCGCACCCTCACGCACCAGACCGCCCTCAGCGAG 
CAGCTCGCCGAAGTCGCCAGCCTGATGGAACAGGCCCAGCAAGCCGAACAAAGCCGCCTGGCATTCGAAGCC 
GGCAGCGACCCGCGCCAGGCCGAGCAGGTCCGCCAGACCCTGGCCGGGATGCTCCAGCGCCTGCAGGCGCTG 
CGCCACAGCGAGCTTGACCCGGCCGCCCTGGCCCACCAGGCCGAAGCCATCGAAGCCTACCGCAAGGCCTTC 
GACGACCTCGCCGCAGCCGATCAGCAACGCAGCGCCGCCCGTGGTGTGCTGGTGGGCACTGCACAGCAGGCG 
CTGGACAGCTTCGCCCGCCTCGAGGAACTGATGGACGCCAGCCTCGCGCAGCAGGCCGGCGACCCGCAGGCC 
TTGCAACGCAGCCGTGCGGTGGCCGACCTGCACCAACAGTTGCTCATGGTGCGTTACCAGGTGCGCGGCTAC 
GTCTTCGAGCGCAGCGACAAGGCCGAGCAGGCCGCGTTCGCCGCGTTCGACGCCCTCCGCCAGGCCGCCACG 
ACGCTGCGAGGCCAATTGCCCGGCGAGGCCGATGCGGCGCTGGAACAGGCCATGGGCAGCCTCCAGGGCTAT 
CGTGGCGGCATCGAGCAGTTCCGTGCCGGCGTCGTCCGCACGCGCCAGGCGCAGCAAGCGATGCAAAGCAGC 
ACCCAGGATATGGCCCGGGCCGGCCGGACCCTCACCGAAGCCGGTCGCCAGTTGCGCGAGAGCACCGCCAGC 
CGCGACCGCGCCAGCCTCTGGCTGATCGCCGCGCTGGCCCTGGCCTTCGGCTGCGTCGCCGGCTGGGCGATC 
AACCGGCAGATCGTCCGGCCGCTGGACGAAGCCCTCGCGCAGGCCGAGGCCATCGCCGCCGGCGACCTCGGC 
AAGCGTTCGCAGAATCCCCTGACCCTCCAGCGCCGCGACGAACTGGGCCAGTTGCAGCGAGTCATGCAGCGC 
ATGGGCGACAGCCTGCGCGAGCTGGTCGGGCGGATCGGCGACGGCGTCAGCCAGTTGGCCAGCTCCGCCGAG 
GAACTCTCGGCGGTCACCGAGCAGACCCGCGCCGGGGTCAACAGCCAGAAAGTGGAGACCGACCAGGTCGCC 
ACCGCCATGCACGAGATGGCCGCCACCGTGCAGGACGTCGCGCGCAACGCCGAGCTGGCCTCCCAGGCCGCT 
CGCCAGGCCGATGAAGAGGCGCGCCAGGGCGACGCGGTGGTCGACCAGGCGGTGACGCGCATCGAGCGCCTG 
GCTACCGAAATGGACGTTTCCAGCGAAGCCATGGCGCGCCTGAAGAACGACAGCGAGCAGATCGGCAGCGTC 
CTCGACGTGATCAAGTCGGTGGCCGAGCAAACCAACCTGCTGGCGCTCAACGCCGCCATCGAAGCGGCACGC 
GCCGGCGACGCCGGACGCGGCTTCGCGGTGGTCGCCGACGAGGTCCGTGGCCTGGCCCAGCGCACCCAGCAG 
TCCACCGCCGAGATCGAGGGCCTGATCCAGCGTCTCCAGCAGGGCGCCGGTGAAGCCGCCGAACGCCTGGAG 
AACAGCCGCTCGCTGACCGCCAGCACGGTGGAACTGGCGCGCCGCGCCGGCGCCGCGCTGGACAGCATCACC 
CGCACCGTCTCCGACATCCAGAACATGAACCTGCAGATCGCCACTGCCGCGGAGCAACAGAGCACGGTGGCC 
GAGGAGATCAACCGCAGCGTCCTCAGCGTGCGCGACGTCGCCGAGCAGTCGGCCGCCGCCAGCGAGCAGACC 
GCCGCCTCCAGCGGCGAGCTGGCGCGCCTGGGCACGCAGTTGCAGGCGCAGGTGGGACGCTTCCGCCTGTAA