ViewGene

Locus Name:
GeneID:
Location:

GeneID:4968
TrivialName: PA14_16320
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16320
PAO1 Ortholog Locus:PA3717
Sequence Length:342
Protein Length:113
Start: 1394099
Stop: 1393758
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07104.1|AE004791_1 (AE004791) probable peptidyl-prolyl cis-trans isomerase, FkbP-type [Pseudomonas aeruginosa PAO1]
Identities = 113/113 (100%), Positives = 113/113 (100%)
Sequence:
ATGAACGACCGACTGCAAATCGAAGACCTCCTCCTGGGCGACGGCAAGGAGGTGGTGAAGGGTGCGCTGATC
ACCACCCAGTACAAGGGCACCCTGGAAGACGGCACGCTGTTCGACTCCTCCTACGAGCGCGGCCGGCCATTC
CAGTGCGTGATCGGCACCGGACGAGTGATCAAGGGTTGGGACCAGGGCCTGATGGGCATGAAGGTCGGCGGC
AAGCGACGGCTGTTCGTCCCTTCCCACCTGGCCTACGGCGAACGGCAGGTCGGCGCGCACATCAAGCCCCAC
TCCAACCTGCTGTTCGAGATCGAACTGCTGGAAGTGCTCACCCGCGACGACTGA
Translation:
MNDRLQIEDLLLGDGKEVVKGALITTQYKGTLEDGTLFDSSYERGRPFQCVIGTGRVIKGWDQGLMGMKVGG
KRRLFVPSHLAYGERQVGAHIKPHSNLLFEIELLEVLTRDD*
AnnotationID:4973GeneID:4968
AnnotatorUID: diggins
Modification Date/Time: 2005-04-22 07:07:07
Gene Name:
Confidence Code:3
GeneProduct:putative FkbP-type peptidyl-prolyl cis-trans isomerase
Cell Localization:()
Synonyms:fkbP-1
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0545
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN53535.1|AE015494_3 (AE015494) peptidyl-prolyl cis-trans isomerase FkbP [Shewanella
           oneidensis MR-1]
          Length = 111

 Score =  187 bits (475), Expect = 1e-47
 Identities = 89/108 (82%), Positives = 101/108 (93%)

>gb|AAO56036.1| (AE016864) peptidyl-prolyl cis-trans isomerase, FKBP-type
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 113

 Score =  186 bits (473), Expect = 2e-47
 Identities = 89/113 (78%), Positives = 101/113 (89%)

Structural Features:
 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 205 residues, only  50.2% aligned
Score =  145 bits (366), Expect = 2e-36
Identities = 59/105 (56%), Positives = 73/105 (69%), Gaps = 2/105 (1%)
Genomic Context:
Comment:
ReferenceID:9936
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27077
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31836
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4968_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4968

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7372 PA3717_tr translation of PA3717 113 99.99 99.99 0 589.0
191196 gb|AAG07104.1|AE004791_1 (AE004791) probable peptidyl-prolyl cis-trans isomerase, FkbP-type [Pseudomonas aeruginosa PAO1] 113 99.99 99.99 0 589.0
191197 gb|AAN53535.1|AE015494_3 (AE015494) peptidyl-prolyl cis-trans isomerase FkbP [Shewanella oneidensis MR-1] 113 78.76 89.38 2 472.0
191198 gb|AAO56036.1| (AE016864) peptidyl-prolyl cis-trans isomerase, FKBP-type [Pseudomonas syringae pv. tomato str. DC3000] 113 78.76 89.38 0 473.0
191200 gb|AAN69893.1|AE016628_6 (AE016790) peptidyl-prolyl cis-trans isomerase, FkbP-type [Pseudomonas putida KT2440] 113 75.22 84.07 1 427.0
GC ORFID: 47970How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3717Glimmer Score:
Start: 3559838Stop: 3560179
Length: 342
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3717 translation of PA3717Homolog Bit Score 231.0
Other Homologs: psyr_15may02_Scaffold7_revised_gene6989 (ORF: BLASTX 190.0), t_PA3717 (ORF: GLIMMER)
GC ORF Sequence
ATGAACGACCGACTGCAAATCGAAGACCTCCTCCTGGGCGACGGCAAGGAGGTGGTGAAGGGTGCGCTGATC
ACCACCCAGTACAAGGGCACCCTGGAAGACGGCACGCTGTTCGACTCCTCCTACGAGCGCGGCCGGCCATTC
CAGTGCGTGATCGGCACCGGACGAGTGATCAAGGGTTGGGACCAGGGCCTGATGGGCATGAAGGTCGGCGGC
AAGCGACGGCTGTTCGTCCCTTCCCACCTGGCCTACGGCGAACGGCAGGTCGGCGCGCACATCAAGCCCCAC
TCCAACCTGCTGTTCGAGATCGAACTGCTGGAAGTGCTCACCCGCGACGACTGA