ViewGene
Locus Name:
GeneID:
Location:

GeneID:4967
TrivialName: PA14_29590
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29590
PAO1 Ortholog Locus:PA2667
Sequence Length:354
Protein Length:117
Start: 2565660
Stop: 2565307
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06055.1|AE004695_8 (AE004695) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 117/117 (100%), Positives = 117/117 (100%)
Sequence:
ATGTCCAAACTTGCCGAGTTCCGCGAGGCAGAGCGCAAACTTCAGGAGCAACTGGCCCTGCTGGAAAAGCTG
AAAAGCGACAGCAGCCTGAAGCAGGAACTGGAATTCAAGGACAAGTTGCAGGCGTTGATGGACAAGTACGGC
ATGACCCTGCACAACATCATCGCCATCCTCGACCCCAAGGCTCCGGTCACCGTCAGCGCCGCTCCGCAGCGC
CGTGCCCGCGCCCTGAAAGTCTACAAGAACCCGAACAACGGTGAAGTCGTCGAAACCAAGGGCGGCAACCAC
AAGGTTCTGAAAGCCTGGAAAGAACAGTACGGTTCCGAAACCGTCGAATCCTGGCTGCAACGCTAA
Translation:
MSKLAEFREAERKLQEQLALLEKLKSDSSLKQELEFKDKLQALMDKYGMTLHNIIAILDPKAPVTVSAAPQR
RARALKVYKNPNNGEVVETKGGNHKVLKAWKEQYGSETVESWLQR*
AnnotationID:4972GeneID:4967
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 18:06:55
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA2667
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9934




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27075




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4967
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7370
                           PA2667_tr
                           translation of PA2667
                           117
                           99.99
                           99.99
                           0
                           590.0
     

     
     
191181
                           gb|AAG06055.1|AE004695_8
                           (AE004695) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           117
                           99.99
                           99.99
                           0
                           590.0
     

     
     
191182
                           gb|AAO56590.1|
                           (AE016867) transcriptional regulator, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           120
                           61.66
                           80.00
                           3
                           376.0
     

     
     
191183
                           gb|AAN69359.1|AE016573_4
                           (AE016788) transcriptional regulator MvaT, P16 subunit, putative [Pseudomonas putida KT2440]
                           120
                           60.83
                           75.83
                           4
                           371.0
     

     
     
191184
                           emb|CAD98777.1|
                           (AJ567347) H-NS [Pseudomonas sp. Y1000]
                           121
                           57.85
                           73.55
                           4
                           355.0
     

     






      

          
GC ORFID: 47969How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2667Glimmer Score: 

          
Start: 2388266Stop: 2388619

          
Length: 354


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA2667 translation of PA2667Homolog Bit Score 231.0

          
Other Homologs:  psyr_15may02_Scaffold7_revised_gene7203 (ORF: BLASTX 146.0), psyr_15may02_Scaffold8_revised_gene7506 (ORF: BLASTX 132.0), t_PA4315 (ORF: BLASTX 116.0), t_PA2667 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCAAACTTGCCGAGTTCCGCGAGGCAGAGCGCAAACTTCAGGAGCAACTGGCCCTGCTGGAAAAGCTG 
AAAAGCGACAGCAGCCTGAAGCAGGAACTGGAATTCAAGGACAAGTTGCAGGCGTTGATGGACAAGTACGGC 
ATGACCCTGCACAACATCATCGCCATCCTCGACCCCAAGGCTCCGGTCACCGTCAGCGCCGCTCCGCAGCGC 
CGTGCCCGCGCCCTGAAAGTCTACAAGAACCCGAACAACGGTGAAGTCGTCGAAACCAAGGGCGGCAACCAC 
AAGGTTCTGAAAGCCTGGAAAGAACAGTACGGTTCCGAAACCGTCGAATCCTGGCTGCAACGCTAA