ViewGene
Locus Name:
GeneID:
Location:

GeneID:4966
TrivialName: PA14_26580
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26580
PAO1 Ortholog Locus:PA2898
Sequence Length:369
Protein Length:122
Start: 2315677
Stop: 2316045
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06286.1|AE004716_4 (AE004716) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 118/122 (96%), Positives = 119/122 (97%)
Sequence:
ATGATCCGCCAGCCCCGCTTTGCCCGTTTCGTCCTGCCGTTGTTGCTGAGCCTGTGCCAGCCGTCCTTCGCC
GCCGAACTCCGCGCGGTTGCCGAAGCACGCCGCCAGGAACTCCTGCTGGAGGACTCGCCGGTGGCGTGCGGC
GAGGCGGGCTGCACGGCGCGGGAAAGCCTCAGCCTGGTGGCATTGCAGGTGCAGGCCCGGGTTCTGGTCACC
CGCCTCGGCCGCGATGACTTTTCCCCGACCTCCCGCCAGCCCGCCGCCGTCCCGGACTACCGCCTGTTCGGC
GATCTCGGCCTGGCGCCAAGCCCCTTCGCCTGGCAAGCGTCGACCGGCGAGAGCGCGGCGGCGGACGCGTTG
CGTTTCTGA
Translation:
MIRQPRFARFVLPLLLSLCQPSFAAELRAVAEARRQELLLEDSPVACGEAGCTARESLSLVALQVQARVLVT
RLGRDDFSPTSRQPAAVPDYRLFGDLGLAPSPFAWQASTGESAAADALRF*
AnnotationID:4971GeneID:4966
AnnotatorUID: diggins
Modification Date/Time: 2005-04-07 12:12:28
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2898
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9932




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27073




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4966
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7369
                           PA2898_tr
                           translation of PA2898
                           122
                           96.72
                           97.54
                           0
                           592.0
     

     
     
191180
                           gb|AAG06286.1|AE004716_4
                           (AE004716) hypothetical protein PA2898 [Pseudomonas aeruginosa PAO1]
                           122
                           96.72
                           97.54
                           0
                           592.0
     

     






      

          
GC ORFID: 47968How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2898Glimmer Score: 

          
Start: 2638249Stop: 2637881

          
Length: 369


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2898 translation of PA2898Homolog Bit Score 232.0

          
Other Homologs:  t_PA2898 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCCGCCAGCCCCGCTTTGCCCGTTTCGTCCTGCCGTTGTTGCTGAGCCTGTGCCAGCCGTCCTTCGCC 
GCCGAACTCCGCGCGGTTGCCGAAGCACGCCGCCAGGAACTCCTGCTGGAGGACTCGCCGGTGGCGTGCGGC 
GAGGCGGGCTGCACGGCGCGGGAAAGCCTCAGCCTGGTGGCATTGCAGGTGCAGGCCCGGGTTCTGGTCACC 
CGCCTCGGCCGCGATGACTTTTCCCCGACCTCCCGCCAGCCCGCCGCCGTCCCGGACTACCGCCTGTTCGGC 
GATCTCGGCCTGGCGCCAAGCCCCTTCGCCTGGCAAGCGTCGACCGGCGAGAGCGCGGCGGCGGACGCGTTG 
CGTTTCTGA