ViewGene
Locus Name:
GeneID:
Location:

GeneID:4965
TrivialName: PA14_30390
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30390
PAO1 Ortholog Locus:PA2606
Sequence Length:360
Protein Length:119
Start: 2632937
Stop: 2632578
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05994.1|AE004689_6 (AE004689) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 119/119 (100%), Positives = 119/119 (100%)
Sequence:
ATGAGCCAGTCGCTGCTGATCATCAGCCGCCAGTCGCCCTGGTCCGGCCCGAGCGCCCGCGAGGCGCTGGAC
ATAGCCCTGGCCGGCGGCGCCTTCGATCTACCGGTCGGCATGCTGTTCCTCGACGACGGCGCGTTCCAGCTG
GCTCCCGGCCAGCATCCTGCGCACCTGCAGCAGAAGGACCTGCAGGCCAACCTGCAGGCCCTTCCGATGTTC
GGCGTGGACGACCTCTACGTCTCGGCCCGCAGCCTGCGCGAGCGTGGCCTGGCGGAAGAGCGCCTGGCCCTC
GCGGTCGAGGTGCTCGACGACCAGGCCCTGCGCGACCTGCTGCAACGCTACGACCAGGTGATTACCCTCTGA
Translation:
MSQSLLIISRQSPWSGPSAREALDIALAGGAFDLPVGMLFLDDGAFQLAPGQHPAHLQQKDLQANLQALPMF
GVDDLYVSARSLRERGLAEERLALAVEVLDDQALRDLLQRYDQVITL*
AnnotationID:4970GeneID:4965
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 11:11:37
Gene Name:
Confidence Code:3
GeneProduct:putative sulphur reductase protein
Cell Localization:()
Synonyms:PA2606
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2923,pfam02635
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56817.1| (AE016868) DsrF family protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 120

 Score =  148 bits (374), Expect = 5e-36
 Identities = 79/120 (65%), Positives = 90/120 (75%), Gaps = 1/120 (0%)

>gb|AAL22313.1| (AE008858) putative oxidation of intracellular sulfur [Salmonella
           typhimurium LT2]
          Length = 118

 Score = 70.9 bits (172), Expect = 1e-12
 Identities = 38/106 (35%), Positives = 54/106 (50%)






 
Structural Features:
COG2923, DsrF, Uncharacterized protein involved in the oxidation of intracellular sulfur 
[Inorganic ion transport and metabolism]
CD-Length = 118 residues, 100.0% aligned
Score =  142 bits (360), Expect = 9e-36
Identities = 55/118 (46%), Positives = 71/118 (60%)

pfam02635, DrsE, DsrE/DsrF-like family. 
DsrE is a small soluble protein involved in intracellular sulfur reduction.
CD-Length = 119 residues, 100.0% aligned
Score =  104 bits (262), Expect = 2e-24
Identities = 46/119 (38%), Positives = 60/119 (50%), Gaps = 2/119 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9930




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27071




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33161




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4965_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4965
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7368
                           PA2606_tr
                           translation of PA2606
                           119
                           99.99
                           99.99
                           0
                           592.0
     

     
     
191177
                           gb|AAG05994.1|AE004689_6
                           (AE004689) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           119
                           99.99
                           99.99
                           0
                           592.0
     

     
     
191178
                           gb|AAN69588.1|AE016592_7
                           (AE016788) conserved hypothetical protein [Pseudomonas putida KT2440]
                           119
                           73.94
                           84.87
                           0
                           438.0
     

     
     
191179
                           gb|AAO56817.1|
                           (AE016868) DsrF family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           122
                           66.39
                           74.59
                           5
                           376.0
     

     






      

          
GC ORFID: 47967How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2606Glimmer Score: 

          
Start: 2320989Stop: 2321348

          
Length: 360


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2606 translation of PA2606Homolog Bit Score 232.0

          
Other Homologs:  psyr_15may02_Scaffold17_revised_gene2743 (ORF: BLASTX 148.0), t_PA2606 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCAGTCGCTGCTGATCATCAGCCGCCAGTCGCCCTGGTCCGGCCCGAGCGCCCGCGAGGCGCTGGAC 
ATAGCCCTGGCCGGCGGCGCCTTCGATCTACCGGTCGGCATGCTGTTCCTCGACGACGGCGCGTTCCAGCTG 
GCTCCCGGCCAGCATCCTGCGCACCTGCAGCAGAAGGACCTGCAGGCCAACCTGCAGGCCCTTCCGATGTTC 
GGCGTGGACGACCTCTACGTCTCGGCCCGCAGCCTGCGCGAGCGTGGCCTGGCGGAAGAGCGCCTGGCCCTC 
GCGGTCGAGGTGCTCGACGACCAGGCCCTGCGCGACCTGCTGCAACGCTACGACCAGGTGATTACCCTCTGA