ViewGene
Locus Name:
GeneID:
Location:

GeneID:4963
TrivialName: PA14_50280
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50280
PAO1 Ortholog Locus:PA1093
Sequence Length:372
Protein Length:123
Start: 4465328
Stop: 4464957
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04482.1|AE004540_2 (AE004540) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 122/123 (99%), Positives = 122/123 (99%)
Sequence:
ATGGACGTCGGAAATATCACTTCCCTTTCTACGTTCAAGACCGGCAGGGCCCCGGAGGCCAGCGGCGATATC
TTTGCGCCGCGCAGCGCAGCGGATGGCAGCGGCAAACCGTTGCCGGAAGTGACGGCTTCCCGGGAGGCCAGC
GAATCTCGCGATGACCTGGGGCTCGCCGTCAGCGACATCCAGTCTTTCGTGCAGAGCGTCAAGCGCAACTTG
AACTTCAGCATCGACGACTCCTCTGGCCAGGTCGTGGTCAAGGTGATCGACGGTGACTCGGGCGAAGTCGTG
CGGCAAATCCCTTCCGAAGAAGTACTAAAACTTGCCGCCCGGCTCGACGACGTACGCAGTGTCCTGTTCGAA
ACCCGCGCCTGA
Translation:
MDVGNITSLSTFKTGRAPEASGDIFAPRSAADGSGKPLPEVTASREASESRDDLGLAVSDIQSFVQSVKRNL
NFSIDDSSGQVVVKVIDGDSGEVVRQIPSEEVLKLAARLDDVRSVLFETRA*
AnnotationID:4968GeneID:4963
AnnotatorUID: danlee
Modification Date/Time: 2004-05-21 11:11:10
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1093, flaG
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1334, pfam03646
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1334, FlaG, Uncharacterized flagellar protein FlaG. Score: 116, 1e-27
pfam03646, FlaG, FlaG protein. Although important for flagella the exact function 
of this protein is unknown.. Score: 102, 1e-23






   
Genomic Context:






   
Comment:


















    ReferenceID:9926




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27067




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4963
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7366
                           PA1093_tr
                           translation of PA1093
                           123
                           99.18
                           99.18
                           0
                           592.0
     

     
     
191174
                           gb|AAG04482.1|AE004540_2
                           (AE004540) hypothetical protein PA1093 [Pseudomonas aeruginosa PAO1]
                           123
                           99.18
                           99.18
                           0
                           592.0
     

     
     
191175
                           gb|AAA99808.1|
                           (U54775) FlaG [Pseudomonas aeruginosa]
                           123
                           70.73
                           70.73
                           32
                           411.0
     

     






      

          
GC ORFID: 47965How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1093Glimmer Score: 

          
Start: 488580Stop: 488951

          
Length: 372


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1093 translation of PA1093Homolog Bit Score 232.0

          
Other Homologs:  t_PA1093 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACGTCGGAAATATCACTTCCCTTTCTACGTTCAAGACCGGCAGGGCCCCGGAGGCCAGCGGCGATATC 
TTTGCGCCGCGCAGCGCAGCGGATGGCAGCGGCAAACCGTTGCCGGAAGTGACGGCTTCCCGGGAGGCCAGC 
GAATCTCGCGATGACCTGGGGCTCGCCGTCAGCGACATCCAGTCTTTCGTGCAGAGCGTCAAGCGCAACTTG 
AACTTCAGCATCGACGACTCCTCTGGCCAGGTCGTGGTCAAGGTGATCGACGGTGACTCGGGCGAAGTCGTG 
CGGCAAATCCCTTCCGAAGAAGTACTAAAACTTGCCGCCCGGCTCGACGACGTACGCAGTGTCCTGTTCGAA 
ACCCGCGCCTGA