ViewGene
Locus Name:
GeneID:
Location:

GeneID:4962
TrivialName: PA14_64480
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64480
PAO1 Ortholog Locus:PA4876
Sequence Length:345
Protein Length:114
Start: 5744232
Stop: 5744576
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08261.1|AE004901_3 (AE004901) osmotically inducible lipoprotein OsmE [Pseudomonas aeruginosa PAO1]
Identities = 114/114 (100%), Positives = 114/114 (100%)
Sequence:
ATGTACAAGCAGTCACTGGCGGCACTGTTCGTGATGGCAACCCTGGCCGGCTGCGCGTCGACCAAGGTGCAG
AACCCGGTCAACTACATCACCTTCCGCAACGAACCGCTGGTCAAGGATGTCGAGAAAGGCATGAGCCAGCAG
GAAGTCCTGCGCATCGGCGGCACGCCTTCCGGCACCCAGAAGCGCCTGATGAAACCGGGGAGCTGCAACAGC
TACATCCTCAACAAGGACGGCCAGCAGCAGCCGTTCTACGTCAGTTTCGACGGCAGCGGCAAGGTCGACGGC
TCGGGCTTCCTGAGCTGCTCCGAGCTGGACCGCCACGAGCGCGACGCCCGCCCCTGA
Translation:
MYKQSLAALFVMATLAGCASTKVQNPVNYITFRNEPLVKDVEKGMSQQEVLRIGGTPSGTQKRLMKPGSCNS
YILNKDGQQQPFYVSFDGSGKVDGSGFLSCSELDRHERDARP*
AnnotationID:4967GeneID:4962
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 11:11:41
Gene Name:osmE
Confidence Code:2
GeneProduct:osmotically inducible lipoprotein OsmE
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04355
Secondary Functional Category(ies):cell envelope biogenesis, outer membrane
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58332.1| (AE016873) osmotically-inducible lipoprotein OsmE, putative
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 112

 Score =  138 bits (347), Expect = 7e-33
 Identities = 59/110 (53%), Positives = 88/110 (80%)

>gb|AAN70424.1|AE016684_3 (AE016792) osmotically-inducible lipoprotein OsmE [Pseudomonas
           putida KT2440]
          Length = 113

 Score =  119 bits (298), Expect = 3e-27
 Identities = 58/104 (55%), Positives = 75/104 (72%), Gaps = 2/104 (1%)








 
Structural Features:
pfam04355, SmpA_OmlA, SmpA / OmlA family. Lipoprotein Bacterial outer membrane 
lipoprotein, possibly involved in in maintaining the structural integrity 
of the cell envelope.
CD-Length = 86 residues,  87.2% aligned
Score = 63.8 bits (155), Expect = 4e-12
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 4/76 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9924




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27065




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35176




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4962_cdd.html


    		




 
URL:

















    ReferenceID:35946




  
Author/Investigator(s):
        Gutierrez C, Gordia S, Bonnassie S.





  
Title:
        Characterization of the osmotically inducible gene osmE of Escherichia coli K-12.




  
PubMed:
        7565114


MedLine:
        




    
Source:
Mol Microbiol. 1995 May;16(3):553-63.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7565114









           
Homologs By Global Alignment 

           

       



     
Gene ID:4962
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7365
                           PA4876_tr
                           translation of PA4876
                           114
                           99.99
                           99.99
                           0
                           595.0
     

     
     
191171
                           gb|AAG08261.1|AE004901_3
                           (AE004901) osmotically inducible lipoprotein OsmE [Pseudomonas aeruginosa PAO1]
                           114
                           99.99
                           99.99
                           0
                           595.0
     

     
     
191172
                           gb|AAO58332.1|
                           (AE016873) osmotically-inducible lipoprotein OsmE, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           114
                           51.75
                           77.19
                           2
                           344.0
     

     
     
191173
                           gb|AAN70424.1|AE016684_3
                           (AE016792) osmotically-inducible lipoprotein OsmE [Pseudomonas putida KT2440]
                           116
                           51.72
                           68.10
                           5
                           298.0
     

     






      

          
GC ORFID: 47964How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4876Glimmer Score: 

          
Start: 5007913Stop: 5008257

          
Length: 345


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4876 translation of PA4876Homolog Bit Score 233.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5817 (ORF: BLASTX 142.0), t_PA4876 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTACAAGCAGTCACTGGCGGCACTGTTCGTGATGGCAACCCTGGCCGGCTGCGCGTCGACCAAGGTGCAG 
AACCCGGTCAACTACATCACCTTCCGCAACGAACCGCTGGTCAAGGATGTCGAGAAAGGCATGAGCCAGCAG 
GAAGTCCTGCGCATCGGCGGCACGCCTTCCGGCACCCAGAAGCGCCTGATGAAACCGGGGAGCTGCAACAGC 
TACATCCTCAACAAGGACGGCCAGCAGCAGCCGTTCTACGTCAGTTTCGACGGCAGCGGCAAGGTCGACGGC 
TCGGGCTTCCTGAGCTGCTCCGAGCTGGACCGCCACGAGCGCGACGCCCGCCCCTGA