ViewGene

Locus Name:
GeneID:
Location:

GeneID:4961
TrivialName: PA14_12030
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12030
PAO1 Ortholog Locus:PA4005
Sequence Length:357
Protein Length:118
Start: 1040070
Stop: 1040426
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07392.1|AE004817_16 (AE004817) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 118/118 (100%), Positives = 118/118 (100%)
Sequence:
ATGCAAACCGAACAACTCGTCCAAGTGGCCATCGATGCCCTGGAAGATCTCAAGGCCCAGGACATCGTGACC
CTCGATGTGCGGGACAAGACCAGCGTCACCGACTACATGGTGATCGCCTGCGGCAGTTCCAGCCGCCAGGTC
AAGTCGCTGGCCGACAACGTCCTGACCAAGGCCAAGGAAAACGGCGTCAAGCCCCTGGGCAGCGAAGGCCTG
GAGTCCGGCGAATGGGCGCTGCTCGACCTGGGCGACGTGGTGGTCCACGTGATGCTCCCGGCGACCCGCCAG
TTCTACGACCTGGAGCGCCTGTGGCAGGGCGCCGAGCAGAGCCGCGCCCAGCACCAGCCGGAAGAGTGA
Translation:
MQTEQLVQVAIDALEDLKAQDIVTLDVRDKTSVTDYMVIACGSSSRQVKSLADNVLTKAKENGVKPLGSEGL
ESGEWALLDLGDVVVHVMLPATRQFYDLERLWQGAEQSRAQHQPEE*
AnnotationID:4966GeneID:4961
AnnotatorUID: urbach
Modification Date/Time: 2004-09-14 11:11:16
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4005
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0799,pfam02410
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
gb|AAG07392.1|AE004817_16 (AE004817) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Length = 118
Score =  233 bits (594), Expect = 2e-61
Identities = 118/118 (100%), Positives = 118/118 (100%)
Structural Features:
gnl|CDD|10667 COG0799, COG0799, Uncharacterized homolog of plant Iojap protein
[Function unknown]
Length = 115
Score =  152 bits (386), Expect = 2e-38
Identities = 62/115 (53%), Positives = 80/115 (69%)
Genomic Context:
Comment:
ReferenceID:9922
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27063
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4961

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7364 PA4005_tr translation of PA4005 118 99.99 99.99 0 594.0
191140 gb|AAG07392.1|AE004817_16 (AE004817) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 118 99.99 99.99 0 594.0
191141 gb|AAO58256.1| (AE016873) iojap-related protein [Pseudomonas syringae pv. tomato str. DC3000] 123 56.91 71.54 5 354.0
191143 gb|AAQ58195.1| (AE016911) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] 122 50.00 68.85 4 308.0
191142 gb|AAN70378.1|AE016679_10 (AE016792) conserved hypothetical protein [Pseudomonas putida KT2440] 139 48.92 61.87 21 347.0
GC ORFID: 47963How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4005Glimmer Score:
Start: 3913868Stop: 3913512
Length: 357
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4005 translation of PA4005Homolog Bit Score 233.0
Other Homologs: psyr_15may02_Scaffold4_revised_gene5324 (ORF: BLASTX 144.0), t_PA4005 (ORF: GLIMMER)
GC ORF Sequence
ATGCAAACCGAACAACTCGTCCAAGTGGCCATCGATGCCCTGGAAGATCTCAAGGCCCAGGACATCGTGACC
CTCGATGTGCGGGACAAGACCAGCGTCACCGACTACATGGTGATCGCCTGCGGCAGTTCCAGCCGCCAGGTC
AAGTCGCTGGCCGACAACGTCCTGACCAAGGCCAAGGAAAACGGCGTCAAGCCCCTGGGCAGCGAAGGCCTG
GAGTCCGGCGAATGGGCGCTGCTCGACCTGGGCGACGTGGTGGTCCACGTGATGCTCCCGGCGACCCGCCAG
TTCTACGACCTGGAGCGCCTGTGGCAGGGCGCCGAGCAGAGCCGCGCCCAGCACCAGCCGGAAGAGTGA