ViewGene

Locus Name:
GeneID:
Location:

GeneID:4960
TrivialName: PA14_42300
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42300
PAO1 Ortholog Locus:PA1720
Sequence Length:348
Protein Length:115
Start: 3771775
Stop: 3771428
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05109.1|AE004598_8 (AE004598) type III export protein PscG [Pseudomonas aeruginosa PAO1]
Identities = 113/115 (98%), Positives = 113/115 (98%)
Sequence:
ATGGACACTCCACTGATACGCGAATTGGCGGAACTGGCGCTGGCCGGCAGCGGGCAGCACTGCCACGAAGAG
GCGCTGTGCATCGCCGAGTGGCTGGAGCGCCTCGGACAGGACGAAGCGGCACGGCTGATCCGGATTTCCAGC
CTGGCCAACCAGGGGCGCTATCAGGAGGCCCTGGTCTTCGCCCATGGCAATCCCTGGCCGGCGCTGGAGCCC
TGGTTCGCCTTGTGCGAGTGGCACCTGGGGCTGGGCGCCGCGCTGGACCGCAGGCTGGCCGGGCTGGGCGGC
AGCAGCGATCCTGCCCTGGCCGACTTCGCCGCCGGCATGCGCGCCCAGGTGCGGACATGA
Translation:
MDTPLIRELAELALAGSGQHCHEEALCIAEWLERLGQDEAARLIRISSLANQGRYQEALVFAHGNPWPALEP
WFALCEWHLGLGAALDRRLAGLGGSSDPALADFAAGMRAQVRT*
AnnotationID:4965GeneID:4960
AnnotatorUID: diggins
Modification Date/Time: 2005-02-28 07:07:13
Gene Name:pscG
Confidence Code:2
GeneProduct:type III export protein PscG
Cell Localization:()
Synonyms:yscG
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN37553.1| (AY150843) YscG [Yersinia enterocolitica]
          Length = 115

 Score =  121 bits (304), Expect = 6e-28
 Identities = 59/107 (55%), Positives = 74/107 (69%)

Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:9920
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27061
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36582
Author/Investigator(s): Yahr TL, Goranson J, Frank DW.
Title: Exoenzyme S of Pseudomonas aeruginosa is secreted by a type III pathway.
PubMed: 8971719
MedLine:
Source:
Mol Microbiol. 1996 Dec;22(5):991-1003.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=97126825&dopt=Abstract
ReferenceID:36583
Author/Investigator(s): Michiels T, Vanooteghem JC, Lambert de Rouvroit C, China B, Gustin A, Boudry P, Cornelis GR.
Title: Analysis of virC, an operon involved in the secretion of Yop proteins by Yersinia enterocolitica.
PubMed: 1860816
MedLine:
Source:
J Bacteriol. 1991 Aug;173(16):4994-5009.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=1860816
Homologs By Global Alignment
Gene ID:4960

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7363 PA1720_tr translation of PA1720 115 98.26 98.26 0 595.0
191129 gb|AAG05109.1|AE004598_8 (AE004598) type III export protein PscG [Pseudomonas aeruginosa PAO1] 115 98.26 98.26 0 595.0
191130 gb|AAC44778.1| (U56077) PscG [Pseudomonas aeruginosa] 115 98.26 98.26 0 595.0
191131 gb|AAO18030.1| (AY144116) LscG [Photorhabdus luminescens] 118 55.93 66.94 4 327.0
191132 emb|CAE16154.1| (BX571871) Type III secretion component protein SctG [Photorhabdus luminescens subsp. laumondii TTO1] 118 55.08 67.79 4 325.0
GC ORFID: 47962How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1720Glimmer Score:
Start: 1182134Stop: 1182481
Length: 348
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1720 translation of PA1720Homolog Bit Score 233.0
Other Homologs:
GC ORF Sequence
ATGGACACTCCACTGATACGCGAATTGGCGGAACTGGCGCTGGCCGGCAGCGGGCAGCACTGCCACGAAGAG
GCGCTGTGCATCGCCGAGTGGCTGGAGCGCCTCGGACAGGACGAAGCGGCACGGCTGATCCGGATTTCCAGC
CTGGCCAACCAGGGGCGCTATCAGGAGGCCCTGGTCTTCGCCCATGGCAATCCCTGGCCGGCGCTGGAGCCC
TGGTTCGCCTTGTGCGAGTGGCACCTGGGGCTGGGCGCCGCGCTGGACCGCAGGCTGGCCGGGCTGGGCGGC
AGCAGCGATCCTGCCCTGGCCGACTTCGCCGCCGGCATGCGCGCCCAGGTGCGGACATGA