ViewGene
Locus Name:
GeneID:
Location:

GeneID:4959
TrivialName: PA14_44110
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44110
PAO1 Ortholog Locus:PA1577
Sequence Length:342
Protein Length:113
Start: 3926483
Stop: 3926824
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04966.1|AE004586_4 (AE004586) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 112/113 (99%), Positives = 113/113 (100%)
Sequence:
ATGCCTGTCTGGCTGCAAACCGCCTTGTTGCTAGCCTGCTCCAACCTGTTCATGACCTTCGCCTGGTATGGC
CACCTGAAGACCCTCAACAGCAAGCCCTGGATCATCGCCGCCCTGATCAGCTGGGGTATCGCGCTGTTCGAA
TACCTGCTGCAGGTGCCGGCCAACCGCATCGGCTACACCGAACTCTCGGTCGGCCAACTGAAGATCATGCAG
GAAGTCATCACCCTGGCGGTCTTCGTCCCGTTCAGCGTCTACTTCATGCAGCAGCCGCTGAAACTGGACTAC
CTCTGGGCCGGCCTGTGCCTGCTCGGCGCGGTGTACTTCATCTTCCGCGCCTGA
Translation:
MPVWLQTALLLACSNLFMTFAWYGHLKTLNSKPWIIAALISWGIALFEYLLQVPANRIGYTELSVGQLKIMQ
EVITLAVFVPFSVYFMQQPLKLDYLWAGLCLLGAVYFIFRA*
AnnotationID:4964GeneID:4959
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 13:01:26
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA1577
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN30419.1|AE014445_12 (AE014445) membrane protein, putative [Brucella suis 1330]
          Length = 116

 Score =  105 bits (262), Expect = 5e-23
 Identities = 54/104 (51%), Positives = 68/104 (65%), Gaps = 1/104 (0%)

>gb|AAO29473.1| (AE012559) transmembrane signal peptide protein [Xylella fastidiosa
           Temecula1]
          Length = 116

 Score =  104 bits (260), Expect = 8e-23
 Identities = 57/110 (51%), Positives = 71/110 (64%), Gaps = 1/110 (0%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9918




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27059




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37231




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4959_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4959
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7362
                           PA1577_tr
                           translation of PA1577
                           113
                           99.11
                           99.99
                           0
                           593.0
     

     
     
191113
                           gb|AAG04966.1|AE004586_4
                           (AE004586) hypothetical protein PA1577 [Pseudomonas aeruginosa PAO1]
                           113
                           99.11
                           99.99
                           0
                           593.0
     

     
     
191115
                           dbj|BAC94269.1|
                           (AP005336) conserved hypothetical protein [Vibrio vulnificus YJ016]
                           117
                           74.35
                           87.17
                           5
                           475.0
     

     
     
191116
                           gb|AAN54438.1|AE015581_5
                           (AE015581) conserved hypothetical protein [Shewanella oneidensis MR-1]
                           116
                           74.13
                           87.93
                           3
                           469.0
     

     
     
191118
                           gb|AAR34651.1|
                           (AE017211) conserved hypothetical protein [Geobacter sulfurreducens PCA]
                           113
                           71.68
                           83.18
                           4
                           446.0
     

     






      

          
GC ORFID: 47961How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1577Glimmer Score: 

          
Start: 1027426Stop: 1027085

          
Length: 342


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1577 translation of PA1577Homolog Bit Score 233.0

          
Other Homologs:  t_PA1577 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCTGTCTGGCTGCAAACCGCCTTGTTGCTAGCCTGCTCCAACCTGTTCATGACCTTCGCCTGGTATGGC 
CACCTGAAGACCCTCAACAGCAAGCCCTGGATCATCGCCGCCCTGATCAGCTGGGGTATCGCGCTGTTCGAA 
TACCTGCTGCAGGTGCCGGCCAACCGCATCGGCTACACCGAACTCTCGGTCGGCCAACTGAAGATCATGCAG 
GAAGTCATCACCCTGGCGGTCTTCGTCCCGTTCAGCGTCTACTTCATGCAGCAGCCGCTGAAACTGGACTAC 
CTCTGGGCCGGCCTGTGCCTGCTCGGCGCGGTGTACTTCATCTTCCGCGCCTGA