ViewGene
Locus Name:
GeneID:
Location:

GeneID:4958
TrivialName: PA14_59880
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59880
PAO1 Ortholog Locus:
Sequence Length:357
Protein Length:118
Start: 5332854
Stop: 5333210
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84155.1| (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
Identities = 118/118 (100%), Positives = 118/118 (100%)
Sequence:
ATGCTGAAACTCACCCTCCAGAAACTGTCCGCCCTCTGCCAGAGCCTGGCCGCCATCACTTTGGCGCTCCCC
GGTATCGCCTTGGCTGCACTCCCCAAACCCGAGGCACCTAGCCGTGGGGAGGGATCGGGCATCATGCAAACC
ATCCAGAACTTCGGCTATGACGGAGCGATGCTCCTCGCGCTGCTCATCTGCGCGGCTGTCTTTCTGGGGGTC
GCTTGGCATACCTACGGCACCTATCACGCCATCCATGACGGGAAGAAGAAGTGGTCGGATCTCGGAGCGGGC
GTAGCCGTAGGTGTCGGCCTGCTGATCTTGATCATTTATCTCGTCACCAAAGCCACCGCCATCATGTAA
Translation:
MLKLTLQKLSALCQSLAAITLALPGIALAALPKPEAPSRGEGSGIMQTIQNFGYDGAMLLALLICAAVFLGV
AWHTYGTYHAIHDGKKKWSDLGAGVAVGVGLLILIIYLVTKATAIM*
AnnotationID:4963GeneID:4958
AnnotatorUID: diggins
Modification Date/Time: 2006-01-30 00:12:06
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9916




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27057




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4958
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
191107
                           gb|AAP84155.1|
                           (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
                           118
                           99.99
                           99.99
                           0
                           595.0
     

     
     
191112
                           gb|AAN62285.1|AF440524_72
                           (AF440524) hypothetical protein [Pseudomonas aeruginosa]
                           120
                           45.83
                           62.50
                           2
                           248.0
     

     
     
191108
                           gb|AAN62147.1|AF440523_54
                           (AF440523) hypothetical protein [Pseudomonas aeruginosa]
                           123
                           44.71
                           65.85
                           9
                           270.0
     

     
     
191109
                           emb|CAE92917.1|
                           (AJ617740) hypothetical protein [Pseudomonas putida]
                           123
                           44.71
                           66.66
                           9
                           273.0
     

     
     
191111
                           gb|AAM37123.1|
                           (AE011864) hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
                           133
                           42.85
                           59.39
                           20
                           256.0
     

     






      

          
GC ORFID: 47960How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL028Glimmer Score: 

          
Start: 4596533Stop: 4596889

          
Length: 357


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_RL028 118 Homolog: ORF116 / Hypothetical protein / P. putida / plasmid pWWO (CAC86817) translation of RL028Homolog Bit Score 233.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene1638 (ORF: BLASTX 100.0)

          
GC ORF Sequence

           
ATGCTGAAACTCACCCTCCAGAAACTGTCCGCCCTCTGCCAGAGCCTGGCCGCCATCACTTTGGCGCTCCCC 
GGTATCGCCTTGGCTGCACTCCCCAAACCCGAGGCACCTAGCCGTGGGGAGGGATCGGGCATCATGCAAACC 
ATCCAGAACTTCGGCTATGACGGAGCGATGCTCCTCGCGCTGCTCATCTGCGCGGCTGTCTTTCTGGGGGTC 
GCTTGGCATACCTACGGCACCTATCACGCCATCCATGACGGGAAGAAGAAGTGGTCGGATCTCGGAGCGGGC 
GTAGCCGTAGGTGTCGGCCTGCTGATCTTGATCATTTATCTCGTCACCAAAGCCACCGCCATCATGTAA