ViewGene

Locus Name:
GeneID:
Location:

GeneID:4957
TrivialName: PA14_60050
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60050
PAO1 Ortholog Locus:
Sequence Length:351
Protein Length:116
Start: 5346740
Stop: 5347090
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84138.1| (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
Identities = 115/116 (99%), Positives = 116/116 (100%)
Sequence:
ATGGCCAAGTACCGCATCTCTCATGATGCCCAAGCGGACATCGTCGATATCCTGCGCTTCACCCACAACCAC
TTCGGCGATGCCGCGCGCCGACGTTACCAGGCACTCATAGGGGCGGCGCTGGAAGCAGTTGCGACAGACCCA
CAACAGGTAGGCAGCATCAGCCGTGAAGAACTGGGAGCTGGCCTGCGCAGCATCCACCTCGTTTACTGCCAC
TCGATGCCCAATGTCGGTAAGGTTGTTCGGCCCAGGCACTTCGTCTTCTACCGGGTGGCGACAGACCAGGTG
CTAGAGGTGGTTCGCGTGCTTCACGACGCCATGGATCTGGATCAACACCTGCCCCAACGATGA
Translation:
MAKYRISHDAQADIVDILRFTHNHFGDAARRRYQALIGAALEAVATDPQQVGSISREELGAGLRSIHLVYCH
SMPNVGKVVRPRHFVFYRVATDQVLEVVRVLHDAMDLDQHLPQR*
AnnotationID:4962GeneID:4957
AnnotatorUID: danlee
Modification Date/Time: 2006-02-03 18:06:04
Gene Name:
Confidence Code:3
GeneProduct:putative plasmid stablization protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3668, pfam05016
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
RL011, CP93
Structural Features:
COG3668, ParE, Plasmid stabilization system protein [General function prediction only].
             CD-Length = 98 residues, 100.0% aligned
             Score = 47.4 bits (112), Expect = 5e-07

pfam05016, Plasmid_stabil, Plasmid stabilisation system protein. 
             CD-Length = 85 residues, 100.0% aligned
             Score = 38.7 bits (90), Expect = 2e-04
Genomic Context:
Comment:
ReferenceID:9914
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17066
Author/Investigator(s):
Title: CDD-search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:NCBI CD-4957.htm
URL:
ReferenceID:27055
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4957

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
191104 gb|AAP84138.1| (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa] 116 99.13 99.99 0 595.0
191105 gb|AAP94682.1| (AY258138) conserved hypothetical protein [Pseudomonas aeruginosa] 116 93.96 97.41 0 565.0
191106 gb|AAK87104.1| (AE008058) AGR_C_2415p [Agrobacterium tumefaciens str. C58 (Cereon)] 124 42.74 58.87 8 253.0
GC ORFID: 47959How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_RL011Glimmer Score:
Start: 4610419Stop: 4610769
Length: 351
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_RL011 116 Homolog: AGR_C_2415p / Hypothetical protein / Agrobacterium tumefaciens / C58 (AAK87104) translation of RL011Homolog Bit Score 233.0
Other Homologs:
GC ORF Sequence
ATGGCCAAGTACCGCATCTCTCATGATGCCCAAGCGGACATCGTCGATATCCTGCGCTTCACCCACAACCAC
TTCGGCGATGCCGCGCGCCGACGTTACCAGGCACTCATAGGGGCGGCGCTGGAAGCAGTTGCGACAGACCCA
CAACAGGTAGGCAGCATCAGCCGTGAAGAACTGGGAGCTGGCCTGCGCAGCATCCACCTCGTTTACTGCCAC
TCGATGCCCAATGTCGGTAAGGTTGTTCGGCCCAGGCACTTCGTCTTCTACCGGGTGGCGACAGACCAGGTG
CTAGAGGTGGTTCGCGTGCTTCACGACGCCATGGATCTGGATCAACACCTGCCCCAACGATGA