ViewGene
Locus Name:
GeneID:
Location:

GeneID:4953
TrivialName: PA14_01560
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01560
PAO1 Ortholog Locus:PA0128
Sequence Length:342
Protein Length:113
Start: 143458
Stop: 143799
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03518.1|AE004450_13 (AE004450) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 113/113 (100%), Positives = 113/113 (100%)
Sequence:
GTGAGCACGCTGCCGCCCTGTCCCCAATGCAACTCCGAATACACCTACGAGGATGGTGCGCTGCTGGTCTGC
CCGGAGTGCGCCCATGAATGGTCGCCGAACGAGGCCGCTACGGCGTCCGATGATGGCAAGGTGATCAAGGAT
TCGGTGGGCAACGTTCTCCAGGACGGCGATACCATCACCGTGATCAAGGACCTGAAAGTGAAAGGCTCCTCG
CTGGTGGTGAAGGTCGGCACCAAGGTGAAGAACATCCGCCTGGTGGACGGCGACCACGACATCGATTGCAAG
ATCGACGGCATTGGCGCGATGAAGCTGAAATCGGAATTCGTCAGGAAGGTCTGA
Translation:
MSTLPPCPQCNSEYTYEDGALLVCPECAHEWSPNEAATASDDGKVIKDSVGNVLQDGDTITVIKDLKVKGSS
LVVKVGTKVKNIRLVDGDHDIDCKIDGIGAMKLKSEFVRKV*
AnnotationID:4958GeneID:4953
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 19:07:11
Gene Name:
Confidence Code:3
GeneProduct:putative alkylphosphonate uptake protein
Cell Localization:()
Synonyms:phnA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative alkylphosphonate utilization operon protein
Functional Category Confidence Code:5
COGs:COG2824,pfam03831
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54532.1| (AE016859) alkylphosphonate utilization operon protein PhnA,
           putative [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 124

 Score =  202 bits (513), Expect = 4e-52
 Identities = 99/112 (88%), Positives = 105/112 (93%), Gaps = 1/112 (0%)

>gb|AAN66311.1|AE016259_9 (AE016776) phnA protein [Pseudomonas putida KT2440]
          Length = 113

 Score =  201 bits (511), Expect = 7e-52
 Identities = 96/113 (84%), Positives = 102/113 (90%)

>gb|AAP28846.1| (AE017040) alkylphosphonate utilization operon protein PhnA
           [Bacillus anthracis str. Ames]
          Length = 113

 Score =  184 bits (468), Expect = 6e-47
 Identities = 85/112 (75%), Positives = 96/112 (85%)








 
Structural Features:
COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism 
[Inorganic ion transport and metabolism]
CD-Length = 112 residues, 100.0% aligned
Score =  182 bits (462), Expect = 1e-47
Identities = 82/112 (73%), Positives = 98/112 (87%)

pfam03831, PhnA, PhnA protein.
CD-Length = 55 residues, 100.0% aligned
Score = 87.6 bits (217), Expect = 3e-19
Identities = 43/55 (78%), Positives = 51/55 (92%)






   
Genomic Context:






   
Comment:


















    ReferenceID:15222




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27047




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33504




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4953_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4953
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7358
                           PA0128_tr
                           translation of PA0128
                           113
                           99.99
                           99.99
                           0
                           594.0
     

     
     
191039
                           gb|AAG03518.1|AE004450_13
                           (AE004450) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           113
                           99.11
                           99.99
                           0
                           591.0
     

     
     
191042
                           gb|AAN66311.1|AE016259_9
                           (AE016776) phnA protein [Pseudomonas putida KT2440]
                           113
                           84.07
                           90.26
                           0
                           507.0
     

     
     
191041
                           gb|AAO54532.1|
                           (AE016859) alkylphosphonate utilization operon protein PhnA, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           124
                           79.83
                           85.48
                           11
                           516.0
     

     
     
191043
                           gb|AAQ58121.1|
                           (AE016911) alkylphosphonate uptake protein [Chromobacterium violaceum ATCC 12472]
                           113
                           77.87
                           89.38
                           2
                           472.0
     

     






      

          
GC ORFID: 47955How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0128Glimmer Score: 

          
Start: 5944797Stop: 5945138

          
Length: 342


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0128 translation of PA0128Homolog Bit Score 233.0

          
Other Homologs:  t_PA0128 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAGCACGCTGCCGCCCTGTCCCCAATGCAACTCCGAATACACCTACGAGGATGGTGCGCTGCTGGTCTGC 
CCGGAGTGCGCCCATGAATGGTCGCCGAACGAGGCCGCTACGGCGTCCGATGATGGCAAGGTGATCAAGGAT 
TCGGTGGGCAACGTTCTCCAGGACGGCGATACCATCACCGTGATCAAGGACCTGAAAGTGAAAGGCTCCTCG 
CTGGTGGTGAAGGTCGGCACCAAGGTGAAGAACATCCGCCTGGTGGACGGCGACCACGACATCGATTGCAAG 
ATCGACGGCATTGGCGCGATGAAGCTGAAATCGGAATTCGTCAGGAAGGTCTGA