ViewGene
Locus Name:
GeneID:
Location:

GeneID:4952
TrivialName: PA14_72150
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72150
PAO1 Ortholog Locus:PA5467
Sequence Length:363
Protein Length:120
Start: 6429129
Stop: 6429491
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08852.1|AE004959_8 (AE004959) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 118/120 (98%), Positives = 119/120 (99%)
Sequence:
ATGACGACAGGACGCGTGGCCGCCGCCCTCACCGCGCTCTGCCTGCTCTGCCAACCGGCCTTCGGTTTCATC
AAGGTGTTTCCCGAATTCGACGACGAACCCGGCGCCGCCACCTTCTTCTGGGCGGCCGTCACCACCGTCGGC
CCGTTCATCGGCAGCACCATCAGCGCACAGGAGTCCAGCGCTGACGGGGGCGACAAGCTCGTCCAGGCGCGG
GACGACGCCGCCAGCTTCGTCGCCAGCGACGGTGCGATCCGTGGCGCGTACCTCCAGGCGGCCTTGCAGGTC
CTGCGCCAGGCCCCGGAATACGCCGGGTACAGCGACCTGCAACTGGCCGCGGCGCTCCTCGCGCGGCAGCCC
TGA
Translation:
MTTGRVAAALTALCLLCQPAFGFIKVFPEFDDEPGAATFFWAAVTTVGPFIGSTISAQESSADGGDKLVQAR
DDAASFVASDGAIRGAYLQAALQVLRQAPEYAGYSDLQLAAALLARQP*
AnnotationID:4957GeneID:4952
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 06:06:04
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5467
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9904




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27045




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4952
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7357
                           PA5467_tr
                           translation of PA5467
                           120
                           98.33
                           99.16
                           0
                           594.0
     

     
     
191038
                           gb|AAG08852.1|AE004959_8
                           (AE004959) hypothetical protein PA5467 [Pseudomonas aeruginosa PAO1]
                           120
                           98.33
                           99.16
                           0
                           594.0
     

     






      

          
GC ORFID: 47954How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5467Glimmer Score: 

          
Start: 5692818Stop: 5693180

          
Length: 363


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5467 translation of PA5467Homolog Bit Score 233.0

          
Other Homologs:  t_PA5467 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACGACAGGACGCGTGGCCGCCGCCCTCACCGCGCTCTGCCTGCTCTGCCAACCGGCCTTCGGTTTCATC 
AAGGTGTTTCCCGAATTCGACGACGAACCCGGCGCCGCCACCTTCTTCTGGGCGGCCGTCACCACCGTCGGC 
CCGTTCATCGGCAGCACCATCAGCGCACAGGAGTCCAGCGCTGACGGGGGCGACAAGCTCGTCCAGGCGCGG 
GACGACGCCGCCAGCTTCGTCGCCAGCGACGGTGCGATCCGTGGCGCGTACCTCCAGGCGGCCTTGCAGGTC 
CTGCGCCAGGCCCCGGAATACGCCGGGTACAGCGACCTGCAACTGGCCGCGGCGCTCCTCGCGCGGCAGCCC 
TGA