ViewGene
Locus Name:
GeneID:
Location:

GeneID:4951
TrivialName: PA14_70010
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70010
PAO1 Ortholog Locus:PA5303
Sequence Length:354
Protein Length:117
Start: 6245452
Stop: 6245099
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08688.1|AE004943_4 (AE004943) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 117/117 (100%), Positives = 117/117 (100%)
Sequence:
ATGCCCATCCAGCGCCAGCACACTAACGAGCGTATGAGCCAGATCGTCGTCCACAACGGCACCGTCTACCTG
GCGGGCCAGGTGGGCGAGGACATGTCCGCGGGCGTCGAGCAGCAGACCCGCGAGACCCTGGCGGCCATCGAG
CGTCTGCTGGAAGAGGCCGGCACCGACAAGACCCGGATCCTCTCGGTGACCATCTACCTGAAGGACATCGAC
GCCGACTTCGAAGGCATGAACCGCGTCTGGGACCAGTGGCTGCCGCGCGGCGTCGCGCCGGCGCGCGCCACC
GTCGAAGCCAAGCTCTGCGAGCCGGAGATCCTGGTAGAGATGTCGGTGGTCGCTGCGCTGCCCTGA
Translation:
MPIQRQHTNERMSQIVVHNGTVYLAGQVGEDMSAGVEQQTRETLAAIERLLEEAGTDKTRILSVTIYLKDID
ADFEGMNRVWDQWLPRGVAPARATVEAKLCEPEILVEMSVVAALP*
AnnotationID:4956GeneID:4951
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 12:12:19
Gene Name:
Confidence Code:3
GeneProduct:putative endoribonuclease L-PSP family protein
Cell Localization:()
Synonyms:PA5303
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0251,pfam01042
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO53656.1| (AE016856) endoribonuclease L-PSP family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 117

 Score =  201 bits (511), Expect = 6e-52
 Identities = 99/117 (84%), Positives = 109/117 (93%)








 
Structural Features:
COG0251, TdcF, Putative translation initiation inhibitor, yjgF family 
[Translation, ribosomal structure and biogenesis]
CD-Length = 130 residues,  93.8% aligned
Score =  113 bits (285), Expect = 4e-27
Identities = 44/123 (35%), Positives = 66/123 (53%), Gaps = 7/123 (5%)

pfam01042, Ribonuc_L-PSP, Endoribonuclease L-PSP
CD-Length = 120 residues,  92.5% aligned
Score = 92.6 bits (230), Expect = 9e-21
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 7/112 (6%)







   
Genomic Context:






   
Comment:


















    ReferenceID:9902




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27043




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34753




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4951_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4951
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7354
                           PA5303_tr
                           translation of PA5303
                           117
                           99.99
                           99.99
                           0
                           593.0
     

     
     
191010
                           gb|AAG08688.1|AE004943_4
                           (AE004943) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           117
                           99.99
                           99.99
                           0
                           593.0
     

     
     
191011
                           gb|AAO53656.1|
                           (AE016856) endoribonuclease L-PSP family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           117
                           84.61
                           93.16
                           0
                           511.0
     

     
     
191013
                           emb|CAC45308.1|
                           (AL591784) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
                           119
                           61.34
                           72.26
                           7
                           325.0
     

     
     
191012
                           gb|AAN70012.1|AE016639_8
                           (AE016790) conserved hypothetical protein [Pseudomonas putida KT2440]
                           117
                           58.97
                           75.21
                           0
                           357.0
     

     






      

          
GC ORFID: 47953How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5303Glimmer Score: 

          
Start: 5509141Stop: 5508788

          
Length: 354


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5303 translation of PA5303Homolog Bit Score 233.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3158 (ORF: BLASTX 201.0), t_PA5083 (ORF: BLASTX 114.0), t_PA1568 (ORF: BLASTX 104.0), t_PA5303 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCATCCAGCGCCAGCACACTAACGAGCGTATGAGCCAGATCGTCGTCCACAACGGCACCGTCTACCTG 
GCGGGCCAGGTGGGCGAGGACATGTCCGCGGGCGTCGAGCAGCAGACCCGCGAGACCCTGGCGGCCATCGAG 
CGTCTGCTGGAAGAGGCCGGCACCGACAAGACCCGGATCCTCTCGGTGACCATCTACCTGAAGGACATCGAC 
GCCGACTTCGAAGGCATGAACCGCGTCTGGGACCAGTGGCTGCCGCGCGGCGTCGCGCCGGCGCGCGCCACC 
GTCGAAGCCAAGCTCTGCGAGCCGGAGATCCTGGTAGAGATGTCGGTGGTCGCTGCGCTGCCCTGA