ViewGene
Locus Name:
GeneID:
Location:

GeneID:495
TrivialName: PA14_41190
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_41190
PAO1 Ortholog Locus:PA1805
Sequence Length:1866
Protein Length:621
Start: 3675414
Stop: 3673549
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05194.1|AE004606_8 (AE004606) peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa PAO1]
Identities = 617/621 (99%), Positives = 618/621 (99%)
Sequence:
ATGCTGCAGAACATCAGGGATAATTCCCAGGGCTGGATCGCCAAGACCATCATTGGCGTGATCATCGTTCTC
CTGTCGCTGACCGGCTTCGACGCGATCATCCGGGCCACCGACCACTCCAACGTGGCCGCCAAGGTCAACGGC
GACGATATCAGTCTCAATGAAGTCCAACAGGCCGTGGACATGCAGCGTCGCCAGCTGCTGCAACGCCTGGGC
AAGGATTTCGATCCATCCATGCTGGATGACAAGCTGCTCAAGGAAGCGGCCCTGAAGGGGCTGATCGAGCGT
ACCCTGCTGCTCCAGGCCGCCAAGGACGACAAGTTCGCCTTCTCCGACCAGGCGCTGGACCAGTTGATCCTG
CAAACTCCCGAGTTCCAGGTCGACGGCAAGTTCAACGCGGATCGCTTCGACCAGGTCATCCGCCAGATGAAC
TACAGCCGCATGCAGTTCCGCCAGATGCTCGGCCAGGAAATGCTCATCGGCCAGCTTCGCGCCGGCCTGGCG
GGCACCGGTTTCGTCACCGACAACGAATTGCAGTCCTTCGCTCGCCTCGAGAAGCAGACCCGCGACTTCGCC
ACCCTGGCGATCAAGGCCGACGCGTCCAAGAGCAGCGTGAGCGAGGACGAGGTGAAGGCCTTCTACGAAGGC
CACAAGAGCGAGTTCATGACTCCCGAGCAGGTGGTCGTCGAATACGTGGAACTGAAGAAGTCCTCCTTCTTC
GACCAGGTCAAGGTGAAGCAGGAAGACCTCGAGGCGTTGTACCAGAAGGAAATCGCCAACCTCTCCGAGCAG
CGCGATGCCGCCCACATCCTGATCGAGGTGAACGACAAGGTCGGCGACGAGCAGGCCAAGGCGAAGATCGAC
GAGATCAAGGCTCGCCTGGCCAAGGGCGAGGATTTCGCCGCGCTGGCCAAGGAGTTCTCCCAGGATATCGGC
TCGGCCGCCACCGGCGGCGACCTGGGCTACGCCGGCCGCGGCGTGTACGACCCCGCGTTCGAGGAGGCGCTG
TATGCGCTGAAGCAAGGTGAGGTATCCGCCCCGGTGAAGACTCCGTACGGCTACCACCTGATCAAGCTGCTG
GGCGTGCAGGCGCCGGAAGTACCGAGCCTGGAAAGCCTCAAGCCGAAGCTCGAGGACGAACTGAAGAAACAG
ATGGTCGAGCAGCGCTTCGTCGAGGCTACCAAGGACTTGGAAaGcTCCGCCTAcgAAGCCGCCGACCTGAGC
CAGCCGGCGcaGGAAaTgGGCCTGAAGGTCCAGACCAGCCAGCCGTTCGGACGTTCGGGGGGCGACGGCATC
GCTGCCAACCGCCAGATCGTGCAGACCGCGTTCAGCCCCGAGGTGCTGGAAGAAGCGGCCAACAGTGGCGCC
ATCGAGCTGGATCCGGACACCGTGGTGGTACTGCGGGTCAAGGAGCACAACAAGCCGAAGGAGCAACCGCTG
GAGCAGGTCGCGGCGAACATCCGCGAGCGCCTGGCTGCCGAAAAGGCCGCCGAGgAGGCGCAGAAGCGTGGC
GAGGCCCTGATCGCAGAGCTGCGTGAAGGCCGTACCTCTTCCGCAGCGGGGGAGTCGTGGAAAGTGGTCGAG
GCGGCCTCCCGCGGCCAGGAAGGCGTCGATCCGAAACTGCTCCAGGCGGTGTTCCGCATGCAGCGTCCGGAG
GCCAAGGACAAGCCTTCGCTCTCTGGCGTGACCCTGGCCAATGGCGATTACGTGGTGATCCGCCTGAATGGC
GTCAGCGAGCCggaggAggCTATCTCCGACGACGAgaaGGCCATGTACCGCCGCTTCCTGGCTTCGCGCAGC
GGACAGGCAGACTTCGCCGCCTTCCGCCGTCAGTTGCAGGACAAGGCGGAAGTCGAGAAATACTGA
Translation:
MLQNIRDNSQGWIAKTIIGVIIVLLSLTGFDAIIRATDHSNVAAKVNGDDISLNEVQQAVDMQRRQLLQRLG
KDFDPSMLDDKLLKEAALKGLIERTLLLQAAKDDKFAFSDQALDQLILQTPEFQVDGKFNADRFDQVIRQMN
YSRMQFRQMLGQEMLIGQLRAGLAGTGFVTDNELQSFARLEKQTRDFATLAIKADASKSSVSEDEVKAFYEG
HKSEFMTPEQVVVEYVELKKSSFFDQVKVKQEDLEALYQKEIANLSEQRDAAHILIEVNDKVGDEQAKAKID
EIKARLAKGEDFAALAKEFSQDIGSAATGGDLGYAGRGVYDPAFEEALYALKQGEVSAPVKTPYGYHLIKLL
GVQAPEVPSLESLKPKLEDELKKQMVEQRFVEATKDLESSAYEAADLSQPAQEMGLKVQTSQPFGRSGGDGI
AANRQIVQTAFSPEVLEEAANSGAIELDPDTVVVLRVKEHNKPKEQPLEQVAANIRERLAAEKAAEEAQKRG
EALIAELREGRTSSAAGESWKVVEAASRGQEGVDPKLLQAVFRMQRPEAKDKPSLSGVTLANGDYVVIRLNG
VSEPEEAISDDEKAMYRRFLASRSGQADFAAFRRQLQDKAEVEKY*
AnnotationID:504GeneID:495
AnnotatorUID: diggins
Modification Date/Time: 2005-04-28 13:01:13
Gene Name:ppiD
Confidence Code:2
GeneProduct:putative peptidyl-prolyl cis-trans isomerase D
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(9) Chaperones & heat shock proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00639
Secondary Functional Category(ies):posttranslational modification, protein turnover, chaperones
EC Number:5.2.1.8
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57191.1| (AE016869) peptidyl-prolyl cis-trans isomerase D, putative
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 627

 Score =  832 bits (2149), Expect = 0.0
 Identities = 417/628 (66%), Positives = 523/628 (83%), Gaps = 8/628 (1%)

>gb|AAN67917.1|AE016424_3 (AE016782) peptidyl-prolyl cis-trans isomerase D, putative
           [Pseudomonas putida KT2440]
          Length = 623

 Score =  822 bits (2124), Expect = 0.0
 Identities = 416/624 (66%), Positives = 510/624 (81%), Gaps = 4/624 (0%)

>gb|AAN54851.1|AE015624_4 (AE015624) peptidyl-prolyl cis-trans isomerase D [Shewanella
           oneidensis MR-1]
          Length = 621

 Score =  349 bits (895), Expect = 3e-95
 Identities = 221/626 (35%), Positives = 355/626 (56%), Gaps = 19/626 (3%)






 
Structural Features:
pfam00639, Rotamase, PPIC-type PPIASE domain. 
CD-Length = 90 residues, 100.0% aligned
Score = 96.5 bits (240), Expect = 7e-21
Identities = 44/93 (47%), Positives = 60/93 (64%), Gaps = 3/93 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:993




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18135




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37114




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:495_cdd.html


    		




 
URL:

















    ReferenceID:37799




  
Author/Investigator(s):
        Dartigalongue C, Raina S.





  
Title:
        A new heat-shock gene, ppiD, encodes a peptidyl-prolyl isomerase required for folding of outer membrane proteins in Escherichia coli.




  
PubMed:
        9670013


MedLine:
        




    
Source:
EMBO J. 1998 Jul 15;17(14):3968-80.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9670013









           
Homologs By Global Alignment 

           

       



     
Gene ID:495
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
860
                           PA1805_tr
                           translation of PA1805
                           621
                           99.35
                           99.51
                           0
                           3057.0
     

     
     
35981
                           gb|AAG05194.1|AE004606_8
                           (AE004606) peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa PAO1]
                           621
                           99.35
                           99.51
                           0
                           3057.0
     

     
     
35983
                           gb|AAN67917.1|AE016424_3
                           (AE016782) peptidyl-prolyl cis-trans isomerase D, putative [Pseudomonas putida KT2440]
                           624
                           66.66
                           81.73
                           4
                           2129.0
     

     
     
35982
                           gb|AAO57191.1|
                           (AE016869) peptidyl-prolyl cis-trans isomerase D, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           628
                           66.40
                           83.28
                           8
                           2157.0
     

     






      

          
GC ORFID: 43497How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1805Glimmer Score: 

          
Start: 1278495Stop: 1280360

          
Length: 1866


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1805 translation of PA1805Homolog Bit Score 1182.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene780 (ORF: BLASTX 838.0), t_PA1805 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGCAGAACATCAGGGATAATTCCCAGGGCTGGATCGCCAAGACCATCATTGGCGTGATCATCGTTCTC 
CTGTCGCTGACCGGCTTCGACGCGATCATCCGGGCCACCGACCACTCCAACGTGGCCGCCAAGGTCAACGGC 
GACGATATCAGTCTCAATGAAGTCCAACAGGCCGTGGACATGCAGCGTCGCCAGCTGCTGCAACGCCTGGGC 
AAGGATTTCGATCCATCCATGCTGGATGACAAGCTGCTCAAGGAAGCGGCCCTGAAGGGGCTGATCGAGCGT 
ACCCTGCTGCTCCAGGCCGCCAAGGACGACAAGTTCGCCTTCTCCGACCAGGCGCTGGACCAGTTGATCCTG 
CAAACTCCCGAGTTCCAGGTCGACGGCAAGTTCAACGCGGATCGCTTCGACCAGGTCATCCGCCAGATGAAC 
TACAGCCGCATGCAGTTCCGCCAGATGCTCGGCCAGGAAATGCTCATCGGCCAGCTTCGCGCCGGCCTGGCG 
GGCACCGGTTTCGTCACCGACAACGAATTGCAGTCCTTCGCTCGCCTCGAGAAGCAGACCCGCGACTTCGCC 
ACCCTGGCGATCAAGGCCGACGCGTCCAAGAGCAGCGTGAGCGAGGACGAGGTGAAGGCCTTCTACGAAGGC 
CACAAGAGCGAGTTCATGACTCCCGAGCAGGTGGTCGTCGAATACGTGGAACTGAAGAAGTCCTCCTTCTTC 
GACCAGGTCAAGGTGAAGCAGGAAGACCTCGAGGCGTTGTACCAGAAGGAAATCGCCAACCTCTCCGAGCAG 
CGCGATGCCGCCCACATCCTGATCGAGGTGAACGACAAGGTCGGCGACGAGCAGGCCAAGGCGAAGATCGAC 
GAGATCAAGGCTCGCCTGGCCAAGGGCGAGGATTTCGCCGCGCTGGCCAAGGAGTTCTCCCAGGATATCGGC 
TCGGCCGCCACCGGCGGCGACCTGGGCTACGCCGGCCGCGGCGTGTACGACCCCGCGTTCGAGGAGGCGCTG 
TATGCGCTGAAGCAAGGTGAGGTATCCGCCCCGGTGAAGACTCCGTACGGCTACCACCTGATCAAGCTGCTG 
GGCGTGCAGGCGCCGGAAGTACCGAGCCTGGAAAGCCTCAAGCCGAAGCTCGAGGACGAACTGAAGAAACAG 
ATGGTCGAGCAGCGCTTCGTCGAGGCTACCAAGGACTTGGAAaGcTCCGCCTAcgAAGCCGCCGACCTGAGC 
CAGCCGGCGcaGGAAaTgGGCCTGAAGGTCCAGACCAGCCAGCCGTTCGGACGTTCGGGGGGCGACGGCATC 
GCTGCCAACCGCCAGATCGTGCAGACCGCGTTCAGCCCCGAGGTGCTGGAAGAAGCGGCCAACAGTGGCGCC 
ATCGAGCTGGATCCGGACACCGTGGTGGTACTGCGGGTCAAGGAGCACAACAAGCCGAAGGAGCAACCGCTG 
GAGCAGGTCGCGGCGAACATCCGCGAGCGCCTGGCTGCCGAAAAGGCCGCCGAGgAGGCGCAGAAGCGTGGC 
GAGGCCCTGATCGCAGAGCTGCGTGAAGGCCGTACCTCTTCCGCAGCGGGGGAGTCGTGGAAAGTGGTCGAG 
GCGGCCTCCCGCGGCCAGGAAGGCGTCGATCCGAAACTGCTCCAGGCGGTGTTCCGCATGCAGCGTCCGGAG 
GCCAAGGACAAGCCTTCGCTCTCTGGCGTGACCCTGGCCAATGGCGATTACGTGGTGATCCGCCTGAATGGC 
GTCAGCGAGCCggaggAggCTATCTCCGACGACGAgaaGGCCATGTACCGCCGCTTCCTGGCTTCGCGCAGC 
GGACAGGCAGACTTCGCCGCCTTCCGCCGTCAGTTGCAGGACAAGGCGGAAGTCGAGAAATACTGA