ViewGene
Locus Name:
GeneID:
Location:

GeneID:4949
TrivialName: PA14_07210
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07210
PAO1 Ortholog Locus:PA0554
Sequence Length:342
Protein Length:113
Start: 622852
Stop: 623193
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03943.1|AE004492_2 (AE004492) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 110/113 (97%), Positives = 110/113 (97%)
Sequence:
ATGAACTACTCGCGTATCGCCCTGCTCGGCGGCCTCGCCGCCGCGGCCCTGCTGGCCGGCTGCTCCGGCTCC
TCGGGCAAGCCCGGTGGCAAGGACTGGACCCGCTGGACCTGCGACAGCAAGGCGGTGATCGAATGGCGCTAT
ATCGACGGCAGCAAGAACATCGTCGACCTGCGCCTGAAGGACGAGGACGACGTGGTCCACCATCTGGAGCAG
GAACCTGCGGCCGTCGGCGCTTTCTATAGCGACGGACGCCTGGGCTTCCACCTGGAGAACGACGAAGGCCTG
GTGTACTGGGTCGAAACCGACGACCTCATCGGTCGCGGTTGCAAGGCGCGCTGA
Translation:
MNYSRIALLGGLAAAALLAGCSGSSGKPGGKDWTRWTCDSKAVIEWRYIDGSKNIVDLRLKDEDDVVHHLEQ
EPAAVGAFYSDGRLGFHLENDEGLVYWVETDDLIGRGCKAR*
AnnotationID:4954GeneID:4949
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 07:07:06
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0554
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70528.1|AE016695_2 (AE016792) lipoprotein, putative [Pseudomonas putida KT2440]
          Length = 109

 Score =  108 bits (271), Expect = 4e-24
 Identities = 55/103 (53%), Positives = 69/103 (66%), Gaps = 3/103 (2%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9898




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27039




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33862




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4949_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4949
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7353
                           PA0554_tr
                           translation of PA0554
                           113
                           97.34
                           97.34
                           0
                           596.0
     

     
     
191005
                           gb|AAG03943.1|AE004492_2
                           (AE004492) hypothetical protein PA0554 [Pseudomonas aeruginosa PAO1]
                           113
                           97.34
                           97.34
                           0
                           596.0
     

     
     
191006
                           gb|AAN70528.1|AE016695_2
                           (AE016792) lipoprotein, putative [Pseudomonas putida KT2440]
                           115
                           48.69
                           61.73
                           8
                           274.0
     

     
     
191007
                           gb|AAO53933.1|
                           (AE016857) lipoprotein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           117
                           46.15
                           56.41
                           13
                           255.0
     

     






      

          
GC ORFID: 47951How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0554Glimmer Score: 

          
Start: 6424194Stop: 6424535

          
Length: 342


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0554 translation of PA0554Homolog Bit Score 234.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6575 (ORF: BLASTX 102.0), t_PA0554 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACTACTCGCGTATCGCCCTGCTCGGCGGCCTCGCCGCCGCGGCCCTGCTGGCCGGCTGCTCCGGCTCC 
TCGGGCAAGCCCGGTGGCAAGGACTGGACCCGCTGGACCTGCGACAGCAAGGCGGTGATCGAATGGCGCTAT 
ATCGACGGCAGCAAGAACATCGTCGACCTGCGCCTGAAGGACGAGGACGACGTGGTCCACCATCTGGAGCAG 
GAACCTGCGGCCGTCGGCGCTTTCTATAGCGACGGACGCCTGGGCTTCCACCTGGAGAACGACGAAGGCCTG 
GTGTACTGGGTCGAAACCGACGACCTCATCGGTCGCGGTTGCAAGGCGCGCTGA