ViewGene
Locus Name:
GeneID:
Location:

GeneID:4947
TrivialName: PA14_63720
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63720
PAO1 Ortholog Locus:PA4820
Sequence Length:363
Protein Length:120
Start: 5681279
Stop: 5680917
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08205.1|AE004895_5 (AE004895) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 119/120 (99%), Positives = 119/120 (99%)
Sequence:
ATGCTCCTGGGGCGTTTCGTCTCGGTCGGCGCCGGTGCCACCGCCGTTCATTACCTGGTGCTGACCCTCCTG
GTCGAGGGCTTCGCCGTCGGCGCCGCCGTGGCCGCCGCGGCGGGAGCAGGCTGCGGGGCTCTGGCTGCCTAC
CTGGGGCATCGCCGGAAGACTTTCCGCCACCGTGGCCCGGTGTTCCGTTCGCTGCCGCGCTTCTTCGCCGTC
AGCCTGCTTTGCGTACTCGGCAACGCCGTCCTGGTGTTGCTGCTCGGCGACCTCGCCGGACTCGACTACCGC
CTGGCCCAGCTCGCCGCGACCGGCGCACTGCTGTTGGCGACCTATCACCTTCATCGACTCTGGACCTTCTCA
TGA
Translation:
MLLGRFVSVGAGATAVHYLVLTLLVEGFAVGAAVAAAAGAGCGALAAYLGHRRKTFRHRGPVFRSLPRFFAV
SLLCVLGNAVLVLLLGDLAGLDYRLAQLAATGALLLATYHLHRLWTFS*
AnnotationID:4952GeneID:4947
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 06:06:32
Gene Name:
Confidence Code:3
GeneProduct:putative membrane proteins
Cell Localization:()
Synonyms:PA4820
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2246,pfam04138
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2246, COG2246, Predicted membrane protein
CD-Length = 139 residues,  90.6% aligned
Score = 64.9 bits (158), Expect = 3e-12
Identities = 37/126 (29%), Positives = 56/126 (44%), Gaps = 6/126 (4%)

pfam04138, GtrA, GtrA-like protein. 
Members of this family are predicted to be integral membrane proteins 
with three or four transmembrane spans.
CD-Length = 119 residues, 100.0% aligned
Score = 64.8 bits (158), Expect = 3e-12
Identities = 39/119 (32%), Positives = 52/119 (43%), Gaps = 4/119 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9894




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27035




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35224




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4947_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4947
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7351
                           PA4820_tr
                           translation of PA4820
                           120
                           99.16
                           99.16
                           0
                           598.0
     

     
     
190999
                           gb|AAG08205.1|AE004895_5
                           (AE004895) hypothetical protein PA4820 [Pseudomonas aeruginosa PAO1]
                           120
                           99.16
                           99.16
                           0
                           598.0
     

     






      

          
GC ORFID: 47949How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4820Glimmer Score: 

          
Start: 4944959Stop: 4944597

          
Length: 363


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4820 translation of PA4820Homolog Bit Score 234.0

          
Other Homologs:  t_PA4820 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTCCTGGGGCGTTTCGTCTCGGTCGGCGCCGGTGCCACCGCCGTTCATTACCTGGTGCTGACCCTCCTG 
GTCGAGGGCTTCGCCGTCGGCGCCGCCGTGGCCGCCGCGGCGGGAGCAGGCTGCGGGGCTCTGGCTGCCTAC 
CTGGGGCATCGCCGGAAGACTTTCCGCCACCGTGGCCCGGTGTTCCGTTCGCTGCCGCGCTTCTTCGCCGTC 
AGCCTGCTTTGCGTACTCGGCAACGCCGTCCTGGTGTTGCTGCTCGGCGACCTCGCCGGACTCGACTACCGC 
CTGGCCCAGCTCGCCGCGACCGGCGCACTGCTGTTGGCGACCTATCACCTTCATCGACTCTGGACCTTCTCA 
TGA