ViewGene
Locus Name:
GeneID:
Location:

GeneID:4946
TrivialName: PA14_62240
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_62240
PAO1 Ortholog Locus:PA4702
Sequence Length:348
Protein Length:115
Start: 5554091
Stop: 5554438
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08088.1|AE004884_6 (AE004884) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 115/115 (100%), Positives = 115/115 (100%)
Sequence:
ATGAACTCGCCCCGTCAGCTCGACTCGCCGCTCTACCAACTGCTCCACGCCGAAGACATCGAAGGCTTCAAC
CGACAGAAGCCGGCCGACGGCTGGATCGACCTGGCCGGCGGCGACTTCCGCGGCCTCGACCTGCGTCTGCTG
GATGCCGCCCGCGTCGACTTCAGCGATGCCTATTTCCGCGGCGCCGACCTGCGCGGCGTGGATCTGCGCGAG
GCGCGCCTGGAGGGCGCCAGCCTGGCCCATGCGCAGATATCCGGTACGTATTTCCCGTTGCGCCTGGCGCCG
GACGAGATCCGCATGTCGGTGAACTTCGGCACCCGCCTGCGCTACCTGCCGGAGCCCTGA
Translation:
MNSPRQLDSPLYQLLHAEDIEGFNRQKPADGWIDLAGGDFRGLDLRLLDAARVDFSDAYFRGADLRGVDLRE
ARLEGASLAHAQISGTYFPLRLAPDEIRMSVNFGTRLRYLPEP*
AnnotationID:4951GeneID:4946
AnnotatorUID: diggins
Modification Date/Time: 2005-03-08 21:09:34
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4702
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54509.1| (AE016859) pentapeptide repeat domain protein [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 114

 Score =  162 bits (410), Expect = 3e-40
 Identities = 75/111 (67%), Positives = 90/111 (81%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9892




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27033




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37623




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4946_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4946
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7350
                           PA4702_tr
                           translation of PA4702
                           115
                           99.99
                           99.99
                           0
                           598.0
     

     
     
190997
                           gb|AAG08088.1|AE004884_6
                           (AE004884) hypothetical protein PA4702 [Pseudomonas aeruginosa PAO1]
                           115
                           99.99
                           99.99
                           0
                           598.0
     

     
     
190998
                           gb|AAO54509.1|
                           (AE016859) pentapeptide repeat domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           115
                           65.21
                           78.26
                           1
                           407.0
     

     






      

          
GC ORFID: 47948How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4702Glimmer Score: 

          
Start: 4817771Stop: 4818118

          
Length: 348


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4702 translation of PA4702Homolog Bit Score 234.0

          
Other Homologs:  t_PA4702 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACTCGCCCCGTCAGCTCGACTCGCCGCTCTACCAACTGCTCCACGCCGAAGACATCGAAGGCTTCAAC 
CGACAGAAGCCGGCCGACGGCTGGATCGACCTGGCCGGCGGCGACTTCCGCGGCCTCGACCTGCGTCTGCTG 
GATGCCGCCCGCGTCGACTTCAGCGATGCCTATTTCCGCGGCGCCGACCTGCGCGGCGTGGATCTGCGCGAG 
GCGCGCCTGGAGGGCGCCAGCCTGGCCCATGCGCAGATATCCGGTACGTATTTCCCGTTGCGCCTGGCGCCG 
GACGAGATCCGCATGTCGGTGAACTTCGGCACCCGCCTGCGCTACCTGCCGGAGCCCTGA