ViewGene

Locus Name:
GeneID:
Location:

GeneID:4945
TrivialName: PA14_60300
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60300
PAO1 Ortholog Locus:
Sequence Length:600
Protein Length:199
Start: 5372541
Stop: 5373140
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP81275.1| (AY273871) PilX [Pseudomonas aeruginosa]
Identities = 198/199 (99%), Positives = 199/199 (100%)
Sequence:
CTGCGCCATACCTCTCGACAGCAGGGATCCACGTTGTTGATCTCGCTGGTTATCTTGTTGATGATCACGCTC
CTCGCCGTTTCCAACATGCGCGAGGTGTCACTGGAAAGCCGTATCACCGGCAATCTCATCGAACAGAAGCGC
CTGCGCAATGCGGGCGAAGCTGGGCTACGCGAAGGTGAACGACGCTTTTTCAATACCATCAAGCCCCCAGAG
GTCGGCAGCGGATGCGCCGATAGCAATGTCAAACGGCCTTGCATACTGAACCTGAGTGCCCTCTCCGTACCC
CGAGATGACGTGCACAACAATCCGGTGGCAGCCCTGAACGGCAAGACAGATAACGCCAATTCACGTGTCTGG
ATGCCCTACCGAGGCAGCGATCTGAATAACCCTACGCAGATCGACAAAGACCGCGCAGTCACCTGGCAGACC
ATCACGGTGCCCGCTGGCGAACAGAACAACGAAGCGGAAAATCCCGAGTACGGCAACATGATGCGCGGGGTC
GGCACGTTCTACTACGAAACCAACAGCCGCGCCCTCAACAAGGCGGGCGGAGAGACTGTTCTACAGGCCGTT
CATGCACGCCTGTATACCAACTGA
Translation:
MRHTSRQQGSTLLISLVILLMITLLAVSNMREVSLESRITGNLIEQKRLRNAGEAGLREGERRFFNTIKPPE
VGSGCADSNVKRPCILNLSALSVPRDDVHNNPVAALNGKTDNANSRVWMPYRGSDLNNPTQIDKDRAVTWQT
ITVPAGEQNNEAENPEYGNMMRGVGTFYYETNSRALNKAGGETVLQAVHARLYTN*
AnnotationID:4950GeneID:4945
AnnotatorUID: danlee
Modification Date/Time: 2005-10-05 17:05:24
Gene Name:pilX
Confidence Code:1
GeneProduct:type 4 fimbrial biogenesis protein PilX
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4726
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
gi|11352776|pir||C83076  type 4 fimbrial biogenesis protein PilX PA4553 
[Pseudomonas aeruginosa PAO1]
     Length=195
     Score =  234 bits (596),  Expect = 2e-60
     Identities = 115/195 (58%), Positives = 148/195 (75%), Gaps = 5/195 (2%)
Structural Features:
COG4726, PilX, Tfp pilus assembly protein PilX 
[Cell motility and secretion / Intracellular trafficking and secretion]
CD-Length = 196 residues,  97.4% aligned
Score =  106 bits (265), Expect = 5e-24
Genomic Context:
PA14 GeneIDs 5422 to 5476 (Trivial Names PA14_60280 to PA14_60320) replace PAO1 genes 
PA4549 through PA4556 required for type 4 fimbrial biogenesis.  PA14 ORFs corresponding 
to fimT (PA4549), pilV (PA4551), and pilY2 (PA4555) are absent.
Comment:
ReferenceID:15218
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27031
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31658
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4945_cdd.html
URL:
ReferenceID:33009
Author/Investigator(s): Alm RA, Hallinan JP, Watson AA, Mattick JS.
Title: Fimbrial biogenesis genes of Pseudomonas aeruginosa: pilW and pilX increase the similarity of type 4 fimbriae to the GSP protein-secretion systems and pilY1 encodes a gonococcal PilC homologue.
PubMed: 8899718
MedLine:
Source:
Mol Microbiol. 1996 Oct;22(1):161-73.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8899718
Homologs By Global Alignment
Gene ID:4945

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
190994 gb|AAP81275.1| (AY273871) PilX [Pseudomonas aeruginosa] 201 99.00 99.00 2 1026.0
7349 PA4553_tr translation of PA4553 200 58.50 75.00 6 595.0
190995 gb|AAG07941.1|AE004869_5 (AE004869) type 4 fimbrial biogenesis protein PilX [Pseudomonas aeruginosa PAO1] 200 58.50 75.00 6 595.0
190996 gb|AAA93501.1| (L76605) pilX gene product [Pseudomonas aeruginosa] 205 42.92 57.56 39 375.0
GC ORFID: 47947How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4553Glimmer Score:
Start: 4636220Stop: 4636819
Length: 600
Start Codon: CTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4553 translation of PA4553Homolog Bit Score 234.0
Other Homologs: t_PA4553 (ORF: GLIMMER)
GC ORF Sequence
CTGCGCCATACCTCTCGACAGCAGGGATCCACGTTGTTGATCTCGCTGGTTATCTTGTTGATGATCACGCTC
CTCGCCGTTTCCAACATGCGCGAGGTGTCACTGGAAAGCCGTATCACCGGCAATCTCATCGAACAGAAGCGC
CTGCGCAATGCGGGCGAAGCTGGGCTACGCGAAGGTGAACGACGCTTTTTCAATACCATCAAGCCCCCAGAG
GTCGGCAGCGGATGCGCCGATAGCAATGTCAAACGGCCTTGCATACTGAACCTGAGTGCCCTCTCCGTACCC
CGAGATGACGTGCACAACAATCCGGTGGCAGCCCTGAACGGCAAGACAGATAACGCCAATTCACGTGTCTGG
ATGCCCTACCGAGGCAGCGATCTGAATAACCCTACGCAGATCGACAAAGACCGCGCAGTCACCTGGCAGACC
ATCACGGTGCCCGCTGGCGAACAGAACAACGAAGCGGAAAATCCCGAGTACGGCAACATGATGCGCGGGGTC
GGCACGTTCTACTACGAAACCAACAGCCGCGCCCTCAACAAGGCGGGCGGAGAGACTGTTCTACAGGCCGTT
CATGCACGCCTGTATACCAACTGA