ViewGene
Locus Name:
GeneID:
Location:

GeneID:4944
TrivialName: PA14_56520
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56520
PAO1 Ortholog Locus:PA4346
Sequence Length:336
Protein Length:111
Start: 5039191
Stop: 5038856
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07734.1|AE004851_2 (AE004851) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 111/111 (100%), Positives = 111/111 (100%)
Sequence:
ATGATCCGTCGCCATCCCTTGCTCTTCCTGTTCGTCCTGGGGCTGCTCGCCGCCCTCGCGTGGGCCTGGCAG
AACCGCATCCACCTGGCGGCCTTTCCCGCCATCATCGGCGCCTACACGGCCAAGGAGTACTGCTCCTGCCGC
TACGTGATGGGGAACTCCGCGGACTATTGCCGGGCCTATACCCAACAGTACGTGCCGATCAGCGGCTTCTTC
GACGACGAAGCCCGCCGCCGGGTGACCGCCCGCGGCCTCGGCAGTACGCAGACGGCCGCCTGGCTGGGCCCG
CGCGAGGGATGCCGGCTCATGCCCGAGGCGGACAGGCTGCCGGACTGA
Translation:
MIRRHPLLFLFVLGLLAALAWAWQNRIHLAAFPAIIGAYTAKEYCSCRYVMGNSADYCRAYTQQYVPISGFF
DDEARRRVTARGLGSTQTAAWLGPREGCRLMPEADRLPD*
AnnotationID:4949GeneID:4944
AnnotatorUID: diggins
Modification Date/Time: 2005-04-29 17:05:29
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4346
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9888




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27029




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4944
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7348
                           PA4346_tr
                           translation of PA4346
                           111
                           99.99
                           99.99
                           0
                           598.0
     

     
     
190991
                           gb|AAG07734.1|AE004851_2
                           (AE004851) hypothetical protein PA4346 [Pseudomonas aeruginosa PAO1]
                           111
                           99.99
                           99.99
                           0
                           598.0
     

     
     
190992
                           gb|AAO57801.1|
                           (AE016871) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           118
                           51.69
                           62.71
                           13
                           298.0
     

     
     
190993
                           gb|AAN66515.1|AE016280_7
                           (AE016777) conserved hypothetical protein [Pseudomonas putida KT2440]
                           111
                           45.94
                           59.45
                           13
                           276.0
     

     






      

          
GC ORFID: 47946How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4346Glimmer Score: 

          
Start: 4302867Stop: 4302532

          
Length: 336


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4346 translation of PA4346Homolog Bit Score 234.0

          
Other Homologs:  psyr_15may02_Scaffold12_revised_gene2075 (ORF: BLASTX 119.0)

          
GC ORF Sequence

           
ATGATCCGTCGCCATCCCTTGCTCTTCCTGTTCGTCCTGGGGCTGCTCGCCGCCCTCGCGTGGGCCTGGCAG 
AACCGCATCCACCTGGCGGCCTTTCCCGCCATCATCGGCGCCTACACGGCCAAGGAGTACTGCTCCTGCCGC 
TACGTGATGGGGAACTCCGCGGACTATTGCCGGGCCTATACCCAACAGTACGTGCCGATCAGCGGCTTCTTC 
GACGACGAAGCCCGCCGCCGGGTGACCGCCCGCGGCCTCGGCAGTACGCAGACGGCCGCCTGGCTGGGCCCG 
CGCGAGGGATGCCGGCTCATGCCCGAGGCGGACAGGCTGCCGGACTGA