ViewGene
Locus Name:
GeneID:
Location:

GeneID:4943
TrivialName: PA14_14800
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14800
PAO1 Ortholog Locus:PA3809
Sequence Length:339
Protein Length:112
Start: 1258782
Stop: 1259120
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07196.1|AE004799_2 (AE004799) ferredoxin [2Fe-2S] [Pseudomonas aeruginosa PAO1]
Identities = 112/112 (100%), Positives = 112/112 (100%)
Sequence:
ATGCCGCAGATCGTGATTCTGCCCCATGCCGACCACTGCCCCGAGGGGGCGGTATTCGAGGCGAAGCCCGGC
GAAACCATCCTGGATGCCGCGTTGCGCAATGGCATCGAGATCGAGCATGCCTGTGAGAAATCCTGCGCCTGC
ACGACCTGCCACGTAATCGTCCGCGAAGGCCTCGATTCCATGGAGCCGTCCGACGAACTCGAAGACGACATG
CTGGACAAGGCCTGGGGTCTGGAGCCCGATTCGCGGCTATCCTGCCAGGCAGTGGTGGCCGACGAAGACCTG
GTGGTCGAGATTCCCAAGTACACCATCAACCAGGTGTCGGAAGGCCACTGA
Translation:
MPQIVILPHADHCPEGAVFEAKPGETILDAALRNGIEIEHACEKSCACTTCHVIVREGLDSMEPSDELEDDM
LDKAWGLEPDSRLSCQAVVADEDLVVEIPKYTINQVSEGH*
AnnotationID:4948GeneID:4943
AnnotatorUID: diggins
Modification Date/Time: 2005-04-24 11:11:17
Gene Name:fdx2
Confidence Code:2
GeneProduct:ferredoxin [2Fe-2S]
Cell Localization:()
Synonyms:fdx
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:ferredoxin
Functional Category Confidence Code:5
COGs:COG0633,cd00207
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAC79498.1| (AF096864) ferredoxin [Pseudomonas aeruginosa]
          Length = 112

 Score =  209 bits (533), Expect = 2e-54
 Identities = 98/112 (87%), Positives = 104/112 (92%)

>gb|AAP17896.1| (AE016987) [2FE-2S] ferredoxin, electron carrer protein [Shigella
           flexneri 2a str. 2457T]
          Length = 111

 Score =  186 bits (472), Expect = 2e-47
 Identities = 89/110 (80%), Positives = 94/110 (85%)

>gb|AAC75578.1| (AE000339) [2FE-2S] ferredoxin, electron carrer protein
           [Escherichia coli K12]
          Length = 111

 Score =  186 bits (472), Expect = 2e-47
 Identities = 89/110 (80%), Positives = 94/110 (85%)






 
Structural Features:
COG0633, Fdx, Ferredoxin [Energy production and conversion]
CD-Length = 102 residues, 100.0% aligned
Score = 87.0 bits (215), Expect = 6e-19
Identities = 49/106 (46%), Positives = 61/106 (57%), Gaps = 6/106 (5%)

cd00207, fer2, 2Fe-2S iron-sulfur cluster binding domain.
CD-Length = 84 residues,  92.9% aligned
Score = 61.6 bits (149), Expect = 3e-11
Identities = 32/86 (37%), Positives = 39/86 (45%), Gaps = 8/86 (9%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9886




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27027




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31747




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4943_cdd.html


    		




 
URL:

















    ReferenceID:34292




  
Author/Investigator(s):
        Ta DT, Vickery LE.





  
Title:
        Cloning, sequencing, and overexpression of a [2Fe-2S] ferredoxin gene from Escherichia coli.




  
PubMed:
        1317854


MedLine:
        




    
Source:
J Biol Chem. 1992 Jun 5;267(16):11120-5.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1317854

















    ReferenceID:34293




  
Author/Investigator(s):
        Ta DT, Seaton BL, Vickery LE.





  
Title:
        Localization of the ferredoxin (fdx) gene on the physical map of the Escherichia coli chromosome.




  
PubMed:
        1512212


MedLine:
        




    
Source:
J Bacteriol. 1992 Sep;174(17):5760-1.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=1512212

















    ReferenceID:34294




  
Author/Investigator(s):
        Takahashi Y, Nakamura M.





  
Title:
        Functional assignment of the ORF2-iscS-iscU-iscA-hscB-hscA-fdx-ORF3 gene cluster involved in the assembly of Fe-S clusters in Escherichia coli.




  
PubMed:
        10544286


MedLine:
        




    
Source:
J Biochem (Tokyo). 1999 Nov;126(5):917-26.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10544286









           
Homologs By Global Alignment 

           

       



     
Gene ID:4943
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7347
                           PA3809_tr
                           translation of PA3809
                           112
                           99.99
                           99.99
                           0
                           598.0
     

     
     
190947
                           gb|AAG07196.1|AE004799_2
                           (AE004799) ferredoxin [2Fe-2S] [Pseudomonas aeruginosa PAO1]
                           112
                           99.99
                           99.99
                           0
                           598.0
     

     
     
190948
                           gb|AAC44152.1|
                           (U41267) Fdx [Pseudomonas aeruginosa]
                           114
                           98.24
                           98.24
                           2
                           587.0
     

     
     
190949
                           gb|AAC79498.1|
                           (AF096864) ferredoxin [Pseudomonas aeruginosa]
                           112
                           87.50
                           92.85
                           0
                           533.0
     

     
     
190954
                           gb|AAC24477.1|
                           (AF010139) ferredoxin; Fdx [Azotobacter vinelandii]
                           113
                           81.41
                           87.61
                           1
                           492.0
     

     






      

          
GC ORFID: 47945How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3809Glimmer Score: 

          
Start: 3695156Stop: 3694818

          
Length: 339


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3809 translation of PA3809Homolog Bit Score 234.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4522 (ORF: BLASTX 159.0), t_PA3809 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGCAGATCGTGATTCTGCCCCATGCCGACCACTGCCCCGAGGGGGCGGTATTCGAGGCGAAGCCCGGC 
GAAACCATCCTGGATGCCGCGTTGCGCAATGGCATCGAGATCGAGCATGCCTGTGAGAAATCCTGCGCCTGC 
ACGACCTGCCACGTAATCGTCCGCGAAGGCCTCGATTCCATGGAGCCGTCCGACGAACTCGAAGACGACATG 
CTGGACAAGGCCTGGGGTCTGGAGCCCGATTCGCGGCTATCCTGCCAGGCAGTGGTGGCCGACGAAGACCTG 
GTGGTCGAGATTCCCAAGTACACCATCAACCAGGTGTCGGAAGGCCACTGA