ViewGene
Locus Name:
GeneID:
Location:

GeneID:4942
TrivialName: PA14_24700
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24700
PAO1 Ortholog Locus:PA3046
Sequence Length:345
Protein Length:114
Start: 2159403
Stop: 2159747
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06434.1|AE004729_8 (AE004729) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 114/114 (100%), Positives = 114/114 (100%)
Sequence:
ATGGCTACTAATCGTTCCCGCCGCCTGCGCAAGAAATTGTGCGTCGATGAATTCCAGGAGCTGGGTTTCGAA
TTGAACTTCCACTACAAGGAAGGCGTGGATGCCGATGCGGTGAACGCTTTCATGTTGCGCTTCATCGATCAG
GCGATCGAAGCCAACGAACTGACCTATGGCGGCTGCGACGAATTCGGTTTCGTCTGCCTGGCGCGCCGTGGC
TCGGTCAATGAAGAGCAGCGGGCCCTGATCGAGGCCTGGTTGAAGCAGCAACCGGAACTGGCCAGCGTCGAG
GTCGGCGCGTTGGTCGACGCCTGGTACCCGGAACAGCCTGTCCTGCCGAAGCTCTAA
Translation:
MATNRSRRLRKKLCVDEFQELGFELNFHYKEGVDADAVNAFMLRFIDQAIEANELTYGGCDEFGFVCLARRG
SVNEEQRALIEAWLKQQPELASVEVGALVDAWYPEQPVLPKL*
AnnotationID:4947GeneID:4942
AnnotatorUID: diggins
Modification Date/Time: 2005-04-12 07:07:11
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3046
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9884




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27025




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36004




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4942_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4942
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7346
                           PA3046_tr
                           translation of PA3046
                           114
                           99.99
                           99.99
                           0
                           596.0
     

     
     
190944
                           gb|AAG06434.1|AE004729_8
                           (AE004729) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           114
                           99.99
                           99.99
                           0
                           596.0
     

     
     
190945
                           gb|AAN67713.1|AE016402_5
                           (AE016781) conserved hypothetical protein [Pseudomonas putida KT2440]
                           114
                           61.40
                           78.07
                           0
                           376.0
     

     
     
190946
                           gb|AAO55829.1|
                           (AE016864) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           114
                           61.40
                           77.19
                           0
                           371.0
     

     






      

          
GC ORFID: 47944How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3046Glimmer Score: 

          
Start: 2794525Stop: 2794181

          
Length: 345


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA3046 translation of PA3046Homolog Bit Score 234.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1083 (ORF: BLASTX 148.0), t_PA3046 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCTACTAATCGTTCCCGCCGCCTGCGCAAGAAATTGTGCGTCGATGAATTCCAGGAGCTGGGTTTCGAA 
TTGAACTTCCACTACAAGGAAGGCGTGGATGCCGATGCGGTGAACGCTTTCATGTTGCGCTTCATCGATCAG 
GCGATCGAAGCCAACGAACTGACCTATGGCGGCTGCGACGAATTCGGTTTCGTCTGCCTGGCGCGCCGTGGC 
TCGGTCAATGAAGAGCAGCGGGCCCTGATCGAGGCCTGGTTGAAGCAGCAACCGGAACTGGCCAGCGTCGAG 
GTCGGCGCGTTGGTCGACGCCTGGTACCCGGAACAGCCTGTCCTGCCGAAGCTCTAA