ViewGene

Locus Name:
GeneID:
Location:

GeneID:4940
TrivialName: PA14_36490
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36490
PAO1 Ortholog Locus:PA2173
Sequence Length:351
Protein Length:116
Start: 3248218
Stop: 3247868
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05561.1|AE004644_8 (AE004644) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 116/116 (100%), Positives = 116/116 (100%)
Sequence:
ATGAACGAATACCTGCCGACTTCGACGGCCAATGGCCTGCCGCACAACCTGCAGCGCGGCGAGCGACTCGCT
TCCATCGGCGCCGGACTGGTCCTGGCCGGCTTCGGCCTGGCCCGCGGTGGCTTGCCCGGCGCCTGCAAGGCG
GTCGCCGGCGGCCTGCTGGTCAGCCGCGGGTTGAGTGGGCATTGCCATGTCAAGGGCCTGCTCAATGAACCG
CGGGAAGAGTTGCAGTTGCTGCGCGAAGAGGTGCAGCACCTGACCCGCCGCCTGCAGCGCCTGCAGGAGCGC
CAGCGCGACGACTCGCGGCAGGACGCTGCGCTGGACGCCGAGCTGCCGCCGAACCTGCCGTGA
Translation:
MNEYLPTSTANGLPHNLQRGERLASIGAGLVLAGFGLARGGLPGACKAVAGGLLVSRGLSGHCHVKGLLNEP
REELQLLREEVQHLTRRLQRLQERQRDDSRQDAALDAELPPNLP*
AnnotationID:4945GeneID:4940
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 12:12:49
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2173
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:9880
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27021
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4940

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7344 PA2173_tr translation of PA2173 116 99.99 99.99 0 596.0
190942 gb|AAG05561.1|AE004644_8 (AE004644) hypothetical protein PA2173 [Pseudomonas aeruginosa PAO1] 116 99.99 99.99 0 596.0
GC ORFID: 47942How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2173Glimmer Score:
Start: 1705697Stop: 1706047
Length: 351
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2173 translation of PA2173Homolog Bit Score 234.0
Other Homologs:
GC ORF Sequence
ATGAACGAATACCTGCCGACTTCGACGGCCAATGGCCTGCCGCACAACCTGCAGCGCGGCGAGCGACTCGCT
TCCATCGGCGCCGGACTGGTCCTGGCCGGCTTCGGCCTGGCCCGCGGTGGCTTGCCCGGCGCCTGCAAGGCG
GTCGCCGGCGGCCTGCTGGTCAGCCGCGGGTTGAGTGGGCATTGCCATGTCAAGGGCCTGCTCAATGAACCG
CGGGAAGAGTTGCAGTTGCTGCGCGAAGAGGTGCAGCACCTGACCCGCCGCCTGCAGCGCCTGCAGGAGCGC
CAGCGCGACGACTCGCGGCAGGACGCTGCGCTGGACGCCGAGCTGCCGCCGAACCTGCCGTGA