ViewGene

Locus Name:
GeneID:
Location:

GeneID:494
TrivialName: PA14_51820
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51820
PAO1 Ortholog Locus:PA0963
Sequence Length:1776
Protein Length:591
Start: 4603076
Stop: 4601301
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04352.1|AE004530_5 (AE004530) aspartyl-tRNA synthetase [Pseudomonas aeruginosa PAO1]
Identities = 591/591 (100%), Positives = 591/591 (100%)
Sequence:
ATGATGCGCAGCCACTATTGCGGCCAACTGAACGAGAGCCTGGACGGCCAGGAAGTCACCCTTTGCGGTTGG
GTTCACCGCCGCCGCGACCATGGTGGAGTGATCTTCCTCGATGTGCGCGATCGCGAGGGGCTGGCCCAGGTG
GTGTTCGATCCGGACCGTGCGGAAACCTTCGCCAAGGCCGACCGGGTGCGCAGCGAGTTCGTGGTGAAGATC
ACCGGCAAGGTGCGCCTGCGCCCTGAAGGCGCGCGCAACCCGAACATGGCGTCTGGCTCCATCGAGGTACTG
GGCTACGAACTGGAAGTGCTGAACCAGGCCGAGACTCCGCCGTTCCCGTTGGATGAATATTCCGATGTGGGC
GAGGAAACCCGCCTGCGCTACCGCTTCATCGACCTGCGTCGTCCGGAGATGGCTGCCAAGCTGAAGCTGCGC
GCGCGCATCACCAGCAGCATTCGCCGCTACCTGGACGACAACGGCTTCCTCGACGTCGAGACCCCGATCCTC
GGCCGGCCGACGCCGGAAGGCGCGCGCGACTACCTGGTGCCGAGCCGTACCTACCCGGGACACTTCTTCGCC
CTGCCGCAGTCGCCGCAGCTGTTCAAGCAACTGCTGATGGTCGCCGGCTTTGATCGCTACTACCAGATCGCC
AAGTGCTTCCGTGACGAGGACCTGCGTGCCGACCGCCAGCCGGAATTCACCCAGATCGACATCGAGACCAGC
TTCCTCGACGAGAGCGACATCATCGGCATCACCGAGAAGATGGTGCGCCAGCTGTTCAAGGAAGTGCTGGAC
GTCGAGTTCGACGAGTTCCCGCACATGCCGTTCGAAGAGGCCATGCGCCGCTACGGTTCGGACAAGCCCGAC
CTGCGCATCCCGCTGGAGTTGGTGGACGTCGCCGACCAGTTGAAGGAAGTGGAGTTCAAGGTCTTCTCCGGT
CCGGCCAACGATCCGAAGGGGCGTGTCGCCGCCCTGCGTGTACCGGGCGCCGCCTCCATGCCGCGCAGCCAG
ATCGACGACTACACCAAGTTCGTCGGCATCTATGGTGCCAAGGGCCTGGCCTACATCAAGGTCAACGAGCGC
GCCAAGGGCGTGGAAGGTCTGCAGTCGCCGATCGTGAAGTTCATCCCCGAGGCCAACCTGAACGTGATCCTC
GATCGCGTTGGCGCGGTCGACGGGGACATCGTGTTCTTCGGCGCCGACAAGGCCAAGATCGTTTGCGATGCC
CTGGGCGCGCTGCGTATCAAGGTCGGCCATGACCTCAAGCTGCTCACCAGGGAGTGGGCGCCCATGTGGGTC
GTGGACTTCCCGATGTTCGAGGAGAACGACGACGGCTCGCTGTCCGCGCTGCACCACCCGTTCACCTCGCCC
AAGTGCACCCCGGCCGAGCTTGAGGCCAATCCGGGCGCGGCGCTTTCCCGCGCCTACGACATGGTGCTCAAC
GGCACCGAGCTGGGTGGCGGTTCCATCCGCATCCACGACAAGTCCATGCAGCAGGCGGTGTTCCGCGTGCTG
GGCATCGACGAGGCGGAGCAGGAAGAGAAATTCGGCTTCCTGCTCGACGCGCTCAAGTACGGTGCGCCGCCG
CATGGCGGCCTGGCCTTCGGCCTGGATCGCCTGGTCATGCTGATGACCGGTGCATCATCGATCCGCGAAGTG
ATCGCCTTCCCGAAGACCCAGAGCGCTGGCGACGTCATGACCCAGGCACCGGGTTCCGTGGACGGCAAGGCC
CTGCGCGAGTTGCACATTCGCCTGCGCGAGCAGCCGAAGGCCGAGTGA
Translation:
MMRSHYCGQLNESLDGQEVTLCGWVHRRRDHGGVIFLDVRDREGLAQVVFDPDRAETFAKADRVRSEFVVKI
TGKVRLRPEGARNPNMASGSIEVLGYELEVLNQAETPPFPLDEYSDVGEETRLRYRFIDLRRPEMAAKLKLR
ARITSSIRRYLDDNGFLDVETPILGRPTPEGARDYLVPSRTYPGHFFALPQSPQLFKQLLMVAGFDRYYQIA
KCFRDEDLRADRQPEFTQIDIETSFLDESDIIGITEKMVRQLFKEVLDVEFDEFPHMPFEEAMRRYGSDKPD
LRIPLELVDVADQLKEVEFKVFSGPANDPKGRVAALRVPGAASMPRSQIDDYTKFVGIYGAKGLAYIKVNER
AKGVEGLQSPIVKFIPEANLNVILDRVGAVDGDIVFFGADKAKIVCDALGALRIKVGHDLKLLTREWAPMWV
VDFPMFEENDDGSLSALHHPFTSPKCTPAELEANPGAALSRAYDMVLNGTELGGGSIRIHDKSMQQAVFRVL
GIDEAEQEEKFGFLLDALKYGAPPHGGLAFGLDRLVMLMTGASSIREVIAFPKTQSAGDVMTQAPGSVDGKA
LRELHIRLREQPKAE*
AnnotationID:503GeneID:494
AnnotatorUID: danlee
Modification Date/Time: 2004-05-12 12:12:01
Gene Name:aspS
Confidence Code:2
GeneProduct:aspartyl-tRNA synthetase
Cell Localization:(1) Cytoplasmic
Synonyms:PA0963, syd
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(24) Transcription, RNA processing and degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0173
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG0173, AspS, Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
        CD-Length = 585 residues, 100.0% aligned
        Score =  916 bits (2370), Expect = 0.0
Genomic Context:
Comment:
ReferenceID:991
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18133
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:494

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
859 PA0963_tr translation of PA0963 591 99.99 99.99 0 3059.0
35844 gb|AAG04352.1|AE004530_5 (AE004530) aspartyl-tRNA synthetase [Pseudomonas aeruginosa PAO1] 591 99.99 99.99 0 3059.0
35845 gb|AAO57440.1| (AE016870) aspartyl-tRNA synthetase [Pseudomonas syringae pv. tomato str. DC3000] 591 89.17 93.90 0 2743.0
35846 gb|AAN66837.1|AE016312_8 (AE016778) aspartyl-tRNA synthetase [Pseudomonas putida KT2440] 591 87.47 93.73 0 2705.0
35847 gb|AAN55467.1|AE015684_4 (AE015684) aspartyl-tRNA synthetase [Shewanella oneidensis MR-1] 593 64.24 79.25 4 2017.0
GC ORFID: 43496How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0963Glimmer Score:
Start: 350831Stop: 352606
Length: 1776
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0963 translation of PA0963Homolog Bit Score 1182.0
Other Homologs: psyr_15may02_Scaffold3_revised_gene4682 (ORF: BLASTX 1061.0), t_PA0963 (ORF: GLIMMER)
GC ORF Sequence
ATGATGCGCAGCCACTATTGCGGCCAACTGAACGAGAGCCTGGACGGCCAGGAAGTCACCCTTTGCGGTTGG
GTTCACCGCCGCCGCGACCATGGTGGAGTGATCTTCCTCGATGTGCGCGATCGCGAGGGGCTGGCCCAGGTG
GTGTTCGATCCGGACCGTGCGGAAACCTTCGCCAAGGCCGACCGGGTGCGCAGCGAGTTCGTGGTGAAGATC
ACCGGCAAGGTGCGCCTGCGCCCTGAAGGCGCGCGCAACCCGAACATGGCGTCTGGCTCCATCGAGGTACTG
GGCTACGAACTGGAAGTGCTGAACCAGGCCGAGACTCCGCCGTTCCCGTTGGATGAATATTCCGATGTGGGC
GAGGAAACCCGCCTGCGCTACCGCTTCATCGACCTGCGTCGTCCGGAGATGGCTGCCAAGCTGAAGCTGCGC
GCGCGCATCACCAGCAGCATTCGCCGCTACCTGGACGACAACGGCTTCCTCGACGTCGAGACCCCGATCCTC
GGCCGGCCGACGCCGGAAGGCGCGCGCGACTACCTGGTGCCGAGCCGTACCTACCCGGGACACTTCTTCGCC
CTGCCGCAGTCGCCGCAGCTGTTCAAGCAACTGCTGATGGTCGCCGGCTTTGATCGCTACTACCAGATCGCC
AAGTGCTTCCGTGACGAGGACCTGCGTGCCGACCGCCAGCCGGAATTCACCCAGATCGACATCGAGACCAGC
TTCCTCGACGAGAGCGACATCATCGGCATCACCGAGAAGATGGTGCGCCAGCTGTTCAAGGAAGTGCTGGAC
GTCGAGTTCGACGAGTTCCCGCACATGCCGTTCGAAGAGGCCATGCGCCGCTACGGTTCGGACAAGCCCGAC
CTGCGCATCCCGCTGGAGTTGGTGGACGTCGCCGACCAGTTGAAGGAAGTGGAGTTCAAGGTCTTCTCCGGT
CCGGCCAACGATCCGAAGGGGCGTGTCGCCGCCCTGCGTGTACCGGGCGCCGCCTCCATGCCGCGCAGCCAG
ATCGACGACTACACCAAGTTCGTCGGCATCTATGGTGCCAAGGGCCTGGCCTACATCAAGGTCAACGAGCGC
GCCAAGGGCGTGGAAGGTCTGCAGTCGCCGATCGTGAAGTTCATCCCCGAGGCCAACCTGAACGTGATCCTC
GATCGCGTTGGCGCGGTCGACGGGGACATCGTGTTCTTCGGCGCCGACAAGGCCAAGATCGTTTGCGATGCC
CTGGGCGCGCTGCGTATCAAGGTCGGCCATGACCTCAAGCTGCTCACCAGGGAGTGGGCGCCCATGTGGGTC
GTGGACTTCCCGATGTTCGAGGAGAACGACGACGGCTCGCTGTCCGCGCTGCACCACCCGTTCACCTCGCCC
AAGTGCACCCCGGCCGAGCTTGAGGCCAATCCGGGCGCGGCGCTTTCCCGCGCCTACGACATGGTGCTCAAC
GGCACCGAGCTGGGTGGCGGTTCCATCCGCATCCACGACAAGTCCATGCAGCAGGCGGTGTTCCGCGTGCTG
GGCATCGACGAGGCGGAGCAGGAAGAGAAATTCGGCTTCCTGCTCGACGCGCTCAAGTACGGTGCGCCGCCG
CATGGCGGCCTGGCCTTCGGCCTGGATCGCCTGGTCATGCTGATGACCGGTGCATCATCGATCCGCGAAGTG
ATCGCCTTCCCGAAGACCCAGAGCGCTGGCGACGTCATGACCCAGGCACCGGGTTCCGTGGACGGCAAGGCC
CTGCGCGAGTTGCACATTCGCCTGCGCGAGCAGCCGAAGGCCGAGTGA