ViewGene

Locus Name:
GeneID:
Location:

GeneID:4939
TrivialName: PA14_55500
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55500
PAO1 Ortholog Locus:PA0680
Sequence Length:375
Protein Length:124
Start: 4940796
Stop: 4941170
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04069.1|AE004503_7 (AE004503) probable type II secretion system protein [Pseudomonas aeruginosa PAO1]
Identities = 124/124 (100%), Positives = 124/124 (100%)
Sequence:
ATGTCCACGCGCCTGTCTTCCCGCGGTTTCACCCTGATCGAAGTGCTGGTCGCGCTGGCCATCGTCGCCATC
GCCCTGGCCGCGGCGATCCGCGCGGTGGGCCTGATGACCGACGGCAATGGTCTGTTGCGCGACAAGTCGCTG
GCCCTGCTGGCAGCGGAGAGCCGGCTCGCCGAGCTACGCCTGGGCGTCGGCGCGGCTCCGGGAAACAGCGAT
TTCGAATGCTCCCAGGGCCGCCTGCGGTTGTACTGCGAACAACGCGTCGAGGCCACCGACGACCCCGCGCTA
CTGTGGGTGGAAATCCGTGTGCGCACGCAGCGCGAACAGGCGGTGCCGCTGGCGCGCCTGAACACCCTGCTG
AGCCGCTCCCGGTGA
Translation:
MSTRLSSRGFTLIEVLVALAIVAIALAAAIRAVGLMTDGNGLLRDKSLALLAAESRLAELRLGVGAAPGNSD
FECSQGRLRLYCEQRVEATDDPALLWVEIRVRTQREQAVPLARLNTLLSRSR*
AnnotationID:4944GeneID:4939
AnnotatorUID: danlee
Modification Date/Time: 2006-01-27 13:01:18
Gene Name:
Confidence Code:3
GeneProduct:HxcV putative pseudopilin
Cell Localization:()
Synonyms:PA0680, hxcV
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:9878
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27019
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4939

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7343 PA0680_tr translation of PA0680 124 99.99 99.99 0 597.0
190941 gb|AAG04069.1|AE004503_7 (AE004503) probable type II secretion system protein [Pseudomonas aeruginosa PAO1] 124 99.99 99.99 0 597.0
GC ORFID: 47941How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0680Glimmer Score:
Start: 13111Stop: 12737
Length: 375
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0680 translation of PA0680Homolog Bit Score 234.0
Other Homologs: t_PA0680 (ORF: GLIMMER)
GC ORF Sequence
ATGTCCACGCGCCTGTCTTCCCGCGGTTTCACCCTGATCGAAGTGCTGGTCGCGCTGGCCATCGTCGCCATC
GCCCTGGCCGCGGCGATCCGCGCGGTGGGCCTGATGACCGACGGCAATGGTCTGTTGCGCGACAAGTCGCTG
GCCCTGCTGGCAGCGGAGAGCCGGCTCGCCGAGCTACGCCTGGGCGTCGGCGCGGCTCCGGGAAACAGCGAT
TTCGAATGCTCCCAGGGCCGCCTGCGGTTGTACTGCGAACAACGCGTCGAGGCCACCGACGACCCCGCGCTA
CTGTGGGTGGAAATCCGTGTGCGCACGCAGCGCGAACAGGCGGTGCCGCTGGCGCGCCTGAACACCCTGCTG
AGCCGCTCCCGGTGA