ViewGene
Locus Name:
GeneID:
Location:

GeneID:4937
TrivialName: PA14_14330
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14330
PAO1 Ortholog Locus:PA3842
Sequence Length:351
Protein Length:116
Start: 1222824
Stop: 1222474
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAA66490.1| (L27629) ORF1 [Pseudomonas aeruginosa]
Identities = 114/116 (98%), Positives = 115/116 (99%)
Sequence:
ATGAATCCACTCTACCGCGCCGCCATCCACCAGCTTTTTCTCGCTCTCGATCTCCCGACGCCCAATGACGAG
GAGAGCGTACTCAGCCTGCAGGTGGGCCCGCATCTCTGCCATCTGGCAGAACATCCGACCGATCACCTGTTG
ATGTTCACCCGCCTGGAAGGACAAGGGGACGCTGCGGCCAGCGAGCAGAACCTGTTCAGCCAGGACCCTTGC
AAGCCGATCCTGGGCCGCGACCCCGAAAGCGGCGATCGGCTGCTCTGGAACCGCCAGCCCTTGCAGTTGCTG
GACAGGGCCCAGATCCACCATCAACTCGAACAACTGGTCGCCGCCGCCGAAGAGCTGCGCTGA
Translation:
MNPLYRAAIHQLFLALDLPTPNDEESVLSLQVGPHLCHLAEHPTDHLLMFTRLEGQGDAAASEQNLFSQDPC
KPILGRDPESGDRLLWNRQPLQLLDRAQIHHQLEQLVAAAEELR*
AnnotationID:4942GeneID:4937
AnnotatorUID: danlee
Modification Date/Time: 2006-02-07 15:03:46
Gene Name:
Confidence Code:3
GeneProduct:probable chaperone
Cell Localization:()
Synonyms:PA3842
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(9) Chaperones & heat shock proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):Secreted Factors (toxins, enzymes, alginate)
EC Number:
Status:ACTIVE
Pathway:
Type III Secretion
Homology:
gi|639901|gb|AAA66490.1|  ORF1 (Pseudomonas aeruginosa strain 388)
     Length=116
     Score =  236 bits (603),  Expect = 1e-61
     Identities = 114/116 (98%), Positives = 115/116 (99%), Gaps = 0/116 (0%)

gi|84325572|ref|ZP_00973607.1|  hypothetical protein Paer2_01003317 [Pseudomonas aeruginosa 2192]
Length=126

 Score =  236 bits (603),  Expect = 1e-61
 Identities = 114/116 (98%), Positives = 115/116 (99%), Gaps = 0/116 (0%)

gi|1449395|emb|CAA67833.1|  hypothetical protein [Pseudomonas aeruginosa]
 gi|9950018|gb|AAG07229.1|  probable chaperone [Pseudomonas aeruginosa PAO1]
 gi|15599037|ref|NP_252531.1|  probable chaperone [Pseudomonas aeruginosa PAO1]
 gi|84319406|ref|ZP_00967803.1|  hypothetical protein PaerC_01002864 [Pseudomonas aeruginosa C3719]
Length=116

 Score =  235 bits (600),  Expect = 3e-61
 Identities = 113/116 (97%), Positives = 115/116 (99%), Gaps = 0/116 (0%)
Structural Features:
pfam05932, CesT, Tir chaperone protein (CesT).
             CD-Length = 123 residues, 100.0% aligned
             Score =  127 bits (321), Expect = 3e-31
Genomic Context:






   
Comment:


















    ReferenceID:9874




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27015




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4937
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
190935
                           gb|AAA66490.1|
                           (L27629) ORF1 [Pseudomonas aeruginosa]
                           116
                           98.27
                           99.13
                           0
                           603.0
     

     
     
7341
                           PA3842_tr
                           translation of PA3842
                           116
                           97.41
                           99.13
                           0
                           600.0
     

     
     
190936
                           gb|AAG07229.1|AE004801_7
                           (AE004801) probable chaperone [Pseudomonas aeruginosa PAO1]
                           116
                           97.41
                           99.13
                           0
                           600.0
     

     
     
190937
                           emb|CAA67833.1|
                           (X99471) hypothetical protein [Pseudomonas aeruginosa]
                           116
                           97.41
                           99.13
                           0
                           600.0
     

     
     
190938
                           gb|AAK83051.1|AF288366_1
                           (AF288366) unknown [Aeromonas salmonicida]
                           118
                           68.64
                           77.11
                           2
                           418.0
     

     






      

          
GC ORFID: 47939How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3842Glimmer Score: 

          
Start: 3731114Stop: 3731464

          
Length: 351


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3842 translation of PA3842Homolog Bit Score 235.0

          
Other Homologs:  t_PA3842 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATCCACTCTACCGCGCCGCCATCCACCAGCTTTTTCTCGCTCTCGATCTCCCGACGCCCAATGACGAG 
GAGAGCGTACTCAGCCTGCAGGTGGGCCCGCATCTCTGCCATCTGGCAGAACATCCGACCGATCACCTGTTG 
ATGTTCACCCGCCTGGAAGGACAAGGGGACGCTGCGGCCAGCGAGCAGAACCTGTTCAGCCAGGACCCTTGC 
AAGCCGATCCTGGGCCGCGACCCCGAAAGCGGCGATCGGCTGCTCTGGAACCGCCAGCCCTTGCAGTTGCTG 
GACAGGGCCCAGATCCACCATCAACTCGAACAACTGGTCGCCGCCGCCGAAGAGCTGCGCTGA