ViewGene
Locus Name:
GeneID:
Location:

GeneID:4936
TrivialName: PA14_16970
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16970
PAO1 Ortholog Locus:PA3664
Sequence Length:348
Protein Length:115
Start: 1454288
Stop: 1453941
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07052.1|AE004786_4 (AE004786) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 113/115 (98%), Positives = 114/115 (99%)
Sequence:
ATGACCTACGTTCTCTACGGCATCAAAGCCTGCGACACCATGAAGAAGGCTCGGACCTGGCTCGACGAGCAC
AAGGTCGCCTACGACTTCCACGACTACAAGGCCGTCGGCATCGACCGCGAACACCTGCAGCGCTGGTGCGCG
GAGCACGGCTGGCAGACCGTCCTCAACCGCGCCGGCACTACCTTCCGCAAGCTCGACGAAGCGCAGAAGGCC
GATCTCGACGAAGCCAAGGCGATCGAGCTGATGCTGGCCCAGCCGTCGATGATCAAGCGCCCGGTGCTGGAA
CTGGGCAGCAGGACGCTGGTCGGCTTCAAGCCCGACGCCTACGCCGCCGCGCTGGCCTGA
Translation:
MTYVLYGIKACDTMKKARTWLDEHKVAYDFHDYKAVGIDREHLQRWCAEHGWQTVLNRAGTTFRKLDEAQKA
DLDEAKAIELMLAQPSMIKRPVLELGSRTLVGFKPDAYAAALA*
AnnotationID:4941GeneID:4936
AnnotatorUID: diggins
Modification Date/Time: 2005-04-21 09:09:34
Gene Name:
Confidence Code:3
GeneProduct:putative arsenate reductase, glutaredoxin family
Cell Localization:()
Synonyms:PA3664
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03960,COG1393
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55049.1| (AE016861) arsC family protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 115

 Score =  205 bits (522), Expect = 3e-53
 Identities = 94/114 (82%), Positives = 104/114 (91%)








 
Structural Features:
pfam03960, ArsC, ArsC family. This family is related to 
glutaredoxins pfam00462.
CD-Length = 110 residues, 100.0% aligned
Score =  125 bits (315), Expect = 2e-30
Identities = 46/111 (41%), Positives = 64/111 (57%), Gaps = 3/111 (2%)

COG1393, ArsC, Arsenate reductase and related proteins, glutaredoxin family 
[Inorganic ion transport and metabolism]
CD-Length = 117 residues,  99.1% aligned
Score =  124 bits (314), Expect = 2e-30
Identities = 41/117 (35%), Positives = 63/117 (53%), Gaps = 3/117 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9872




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27013




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31880




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4936_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4936
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7340
                           PA3664_tr
                           translation of PA3664
                           115
                           98.26
                           99.13
                           0
                           600.0
     

     
     
190902
                           gb|AAG07052.1|AE004786_4
                           (AE004786) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           115
                           98.26
                           99.13
                           0
                           600.0
     

     
     
190903
                           gb|AAO55049.1|
                           (AE016861) arsC family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           115
                           81.73
                           90.43
                           0
                           521.0
     

     
     
190904
                           gb|AAN67152.1|AE016344_2
                           (AE016779) conserved hypothetical protein [Pseudomonas putida KT2440]
                           115
                           80.00
                           90.43
                           0
                           512.0
     

     
     
190905
                           emb|CAE27713.1|
                           (BX572600) conserved unknown protein [Rhodopseudomonas palustris CGA009]
                           115
                           71.30
                           79.13
                           0
                           432.0
     

     






      

          
GC ORFID: 47938How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3664Glimmer Score: 

          
Start: 3499649Stop: 3499996

          
Length: 348


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3664 translation of PA3664Homolog Bit Score 235.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4802 (ORF: BLASTX 205.0), t_PA3664 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCTACGTTCTCTACGGCATCAAAGCCTGCGACACCATGAAGAAGGCTCGGACCTGGCTCGACGAGCAC 
AAGGTCGCCTACGACTTCCACGACTACAAGGCCGTCGGCATCGACCGCGAACACCTGCAGCGCTGGTGCGCG 
GAGCACGGCTGGCAGACCGTCCTCAACCGCGCCGGCACTACCTTCCGCAAGCTCGACGAAGCGCAGAAGGCC 
GATCTCGACGAAGCCAAGGCGATCGAGCTGATGCTGGCCCAGCCGTCGATGATCAAGCGCCCGGTGCTGGAA 
CTGGGCAGCAGGACGCTGGTCGGCTTCAAGCCCGACGCCTACGCCGCCGCGCTGGCCTGA