ViewGene

Locus Name:
GeneID:
Location:

GeneID:4933
TrivialName: PA14_38710
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38710
PAO1 Ortholog Locus:PA1995
Sequence Length:357
Protein Length:118
Start: 3452091
Stop: 3452447
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05383.1|AE004626_2 (AE004626) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 117/118 (99%), Positives = 117/118 (99%)
Sequence:
ATGACCGCCGACCAGATCGCCGCCTTCTGCCTGCAACTGCCCGGCGCCCGGGAAGACCTCAAGTGGGGTTCG
AACCGGGTGTTCTCGGTGGCCGGCAACAAGATGTTCGCCATCCTCGACTTCGTCGACAAGGACGGCGGCCTG
GCCTTCAAGGTCGGCAGCGAGCTGTTCCTCGGCTATGTCGACCGCCCCGGCATCCGTCCGGCGCCCTACCTG
GCGCGCGCGCACTGGATCGTCATGGCCCGCCCCTACCCGATGAAGGCGGCGGAGTTGCGCGAGGCCCTGGTC
CGTTCCCATCAGCTGGTGGTGGCGCGCCTGCCCAAGCGCCAGCGCCTCGGCCTGGTACTCGACGCATGA
Translation:
MTADQIAAFCLQLPGAREDLKWGSNRVFSVAGNKMFAILDFVDKDGGLAFKVGSELFLGYVDRPGIRPAPYL
ARAHWIVMARPYPMKAAELREALVRSHQLVVARLPKRQRLGLVLDA*
AnnotationID:4938GeneID:4933
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 17:05:37
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1995
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:9866
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27007
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32731
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4933_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4933

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7336 PA1995_tr translation of PA1995 118 99.15 99.15 0 603.0
190841 gb|AAG05383.1|AE004626_2 (AE004626) hypothetical protein PA1995 [Pseudomonas aeruginosa PAO1] 118 99.15 99.15 0 603.0
190842 gb|AAN68472.1|AE016479_12 (AE016784) conserved hypothetical protein [Pseudomonas putida KT2440] 127 63.77 70.07 13 405.0
190843 gb|AAO56626.1| (AE016867) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 118 58.47 72.03 4 351.0
GC ORFID: 47935How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1995Glimmer Score:
Start: 1501820Stop: 1501464
Length: 357
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1995 translation of PA1995Homolog Bit Score 236.0
Other Homologs: psyr_15may02_Scaffold7_revised_gene7229 (ORF: BLASTX 152.0), t_PA1995 (ORF: GLIMMER)
GC ORF Sequence
ATGACCGCCGACCAGATCGCCGCCTTCTGCCTGCAACTGCCCGGCGCCCGGGAAGACCTCAAGTGGGGTTCG
AACCGGGTGTTCTCGGTGGCCGGCAACAAGATGTTCGCCATCCTCGACTTCGTCGACAAGGACGGCGGCCTG
GCCTTCAAGGTCGGCAGCGAGCTGTTCCTCGGCTATGTCGACCGCCCCGGCATCCGTCCGGCGCCCTACCTG
GCGCGCGCGCACTGGATCGTCATGGCCCGCCCCTACCCGATGAAGGCGGCGGAGTTGCGCGAGGCCCTGGTC
CGTTCCCATCAGCTGGTGGTGGCGCGCCTGCCCAAGCGCCAGCGCCTCGGCCTGGTACTCGACGCATGA