ViewGene
Locus Name:
GeneID:
Location:

GeneID:4931
TrivialName: PA14_46830
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46830
PAO1 Ortholog Locus:PA1349
Sequence Length:351
Protein Length:116
Start: 4171061
Stop: 4170711
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04738.1|AE004564_7 (AE004564) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 116/116 (100%), Positives = 116/116 (100%)
Sequence:
ATGAAATACCTCTGCCTGATCTATTTCGACGAAGCGAAGCTGGCCGCCGTGCCGGCCGAGGAGCTTGCCGCC
ATCGTCGACGAGTGCATGACCTACTCCGACCAGTTGGGCAAGGCCGGCCACTACATCGCCTCGCACGCCCTG
CAGTCGGTGCAGACCGCCACCACCCTGCGCCACCAGGGCGGGCGGCTGGCGATGACCGACGGGCCGTTCGCC
GAGACCAAGGAGCAACTCGGCGGTTTCTACCTGATCGAGGCGCGCGACCTCAACCAGGCCCTGCAGATCGCC
GCGAAGATTCCGCCGGGACGGCTCGGCTGCGTCGAAGTGCGACCGGTCAAGGAATGGGAGTGA
Translation:
MKYLCLIYFDEAKLAAVPAEELAAIVDECMTYSDQLGKAGHYIASHALQSVQTATTLRHQGGRLAMTDGPFA
ETKEQLGGFYLIEARDLNQALQIAAKIPPGRLGCVEVRPVKEWE*
AnnotationID:4936GeneID:4931
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 08:08:17
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1349
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9862




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27003




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37440




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4931_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4931
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7334
                           PA1349_tr
                           translation of PA1349
                           116
                           99.99
                           99.99
                           0
                           601.0
     

     
     
190821
                           gb|AAG04738.1|AE004564_7
                           (AE004564) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           116
                           99.99
                           99.99
                           0
                           601.0
     

     
     
190822
                           gb|AAN70128.1|AE016652_9
                           (AE016791) conserved hypothetical protein [Pseudomonas putida KT2440]
                           117
                           55.55
                           72.64
                           4
                           331.0
     

     
     
190823
                           dbj|BAC51878.1|
                           (AP005959) bll6613 [Bradyrhizobium japonicum USDA 110]
                           116
                           46.55
                           68.96
                           0
                           271.0
     

     
     
190824
                           dbj|BAB50953.1|
                           (AP003003) hypothetical protein [Mesorhizobium loti]
                           118
                           44.91
                           64.40
                           2
                           249.0
     

     






      

          
GC ORFID: 47933How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1349Glimmer Score: 

          
Start: 782848Stop: 783198

          
Length: 351


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1349 translation of PA1349Homolog Bit Score 236.0

          
Other Homologs:  t_PA1349 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAATACCTCTGCCTGATCTATTTCGACGAAGCGAAGCTGGCCGCCGTGCCGGCCGAGGAGCTTGCCGCC 
ATCGTCGACGAGTGCATGACCTACTCCGACCAGTTGGGCAAGGCCGGCCACTACATCGCCTCGCACGCCCTG 
CAGTCGGTGCAGACCGCCACCACCCTGCGCCACCAGGGCGGGCGGCTGGCGATGACCGACGGGCCGTTCGCC 
GAGACCAAGGAGCAACTCGGCGGTTTCTACCTGATCGAGGCGCGCGACCTCAACCAGGCCCTGCAGATCGCC 
GCGAAGATTCCGCCGGGACGGCTCGGCTGCGTCGAAGTGCGACCGGTCAAGGAATGGGAGTGA