ViewGene

Locus Name:
GeneID:
Location:

GeneID:493
TrivialName: PA14_21870
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21870
PAO1 Ortholog Locus:PA3258
Sequence Length:1806
Protein Length:601
Start: 1902124
Stop: 1900319
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06646.1|AE004748_4 (AE004748) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 596/601 (99%), Positives = 599/601 (99%)
Sequence:
GTGAAATACGGGGCCGGTTGCACAACCGGCCCTTTTTCATTGCGACGAGAGCGTTCCATGACCGTCACCGAG
CAGTTGAGCGCCCTGGACAGCATCCTGGCCCACGGCGACCTGCACTGCCTGTTCCAGCCCATCCTCTCGCTT
TCCGAACGGCGTCTGGTCGGCTACGAAGCGCTAACCCGCGGTCCGTCCAACAGCCCGCTGCACTCGCCCCTG
GCGTTGTTCGCCGTGGCCCGCCAATGCGGACGGCTGAGCGAACTGGAACTGCTCTGCCGACAACGCGCCTTC
AGCCGCTTCCGCGACATCCAGGGCGACGCCATGCTGTTCCTCAACGTCTCTCCGGAGTCCCTCCTCGAAGCC
GGCCATCCGCCCGGCCGCACCCTGCAATTGCTGCAACAGCTGGGGATCTCGCCGAACCGGGTGGTGATCGAA
CTGACCGAACAGACCCCCATCGACGACTTCGACCTGCTCGACACCGCGCTGCACCACTATCGCGCCATGGGC
TTCTCCATCGCCCTCGACGACCTCGGCGCTGGCTACTCCAGCCTGCGCCTGTGGTCGGAACTGCGTCCGGAC
TACGTGAAGATCGACCGCCACTTCGTCGACGGCATCCACCTGGACACCGTGAAACGCGAGTTCGTCGGCTCC
ATCCTGAAGATGGCCCGAGCCTCTCGCGCCCAGGTCATCGCCGAAGGCATCGAACTGCCCGAGGAACTGGCG
GTGCTTAGCGAGATGGGGGTTGACCTGGTGCAAGGCTATCTGTTCGGCCGCCCGCAGGAACACCCGGCAAGC
GACGTACAACAGATGCTGCCCAGCGCTGGCGCCCCCAGCCAGTCTTCCAGCGACGAGCATGGCGACCTGCGT
GCGCTGCTGCTGGAACAGCGCGCGGTCGACGTTCGCACCTCGACCCAGGAAGTGGTGGAAATCTTCCGCCGC
CAGGCCAACCTGAACTCCCTGGCGATCCTCGACGAAGAGGGGCGTCCCATCGGCATCGTCCATCGCCACGCG
CTCACCGACGCCTTGCTCCGGCCCTTCGCCTGCGACCTGTTCCTGCGCAAGCCGATCAGCCGCCTGATGAGC
GACGATTTTCTCGCCGCGGAACTCGGCCAGACCCTGCAGCAGGTCAGCCGCCTGCTGACCAGCCGCGCACGC
CAGCGTATCGAGGAAGATTTCATCGTCACCCGCGGCGGGCACTATGCGGGCATGGGCCGGGTGATCGACGTG
CTCAGGCTGATCACCGAGGAAAAGCTCCAGCAGGCGCGGCACGCCAATCCGCTCACCTTGCTTCCCGGCAAC
GTGCCGATCCAGCAATGCCTCGAACGCCTGCTGCAACAAAGGCGCGAGGCGGTGATCTGCTACATCGACATC
GACAGCTTCAAACCCTTCAACGATCTCTACGGCTACGCCCGCGGCGACGAGGTCCTGCTGTGCCTGGCACAG
TGCCTGAGCGAACGGATCGACCCGGGCAGCGACTTCGTCGGCCATATCGGCGGTGACGACTTCATGCTGGTG
CTCGGCCCCGAGGACTGGCGCACACGGATCGACCGGTTGCTGGAAACCTTCCAGAGCCAATGCCGGCGCTTC
TACAGCCGCGAGCACCTGGAAGCCGGCTGTTTCGTTGCGCACAACCGCCATGGCCAGCGCGAGGAGTACCCG
CTGCTGTCATTGTCCGTCGGCGTGGTGCATCTACCGGCCGAAGCCTGTCAGGGAATGGATGCCGCGCACCTG
GCGACGCTGGCCTCCGAGGCCAAGCGCCAGGCCAAGGCGGTGCCAGGCTACAGCCTGCACCTGATCGAGGCC
GCCTGA
Translation:
MKYGAGCTTGPFSLRRERSMTVTEQLSALDSILAHGDLHCLFQPILSLSERRLVGYEALTRGPSNSPLHSPL
ALFAVARQCGRLSELELLCRQRAFSRFRDIQGDAMLFLNVSPESLLEAGHPPGRTLQLLQQLGISPNRVVIE
LTEQTPIDDFDLLDTALHHYRAMGFSIALDDLGAGYSSLRLWSELRPDYVKIDRHFVDGIHLDTVKREFVGS
ILKMARASRAQVIAEGIELPEELAVLSEMGVDLVQGYLFGRPQEHPASDVQQMLPSAGAPSQSSSDEHGDLR
ALLLEQRAVDVRTSTQEVVEIFRRQANLNSLAILDEEGRPIGIVHRHALTDALLRPFACDLFLRKPISRLMS
DDFLAAELGQTLQQVSRLLTSRARQRIEEDFIVTRGGHYAGMGRVIDVLRLITEEKLQQARHANPLTLLPGN
VPIQQCLERLLQQRREAVICYIDIDSFKPFNDLYGYARGDEVLLCLAQCLSERIDPGSDFVGHIGGDDFMLV
LGPEDWRTRIDRLLETFQSQCRRFYSREHLEAGCFVAHNRHGQREEYPLLSLSVGVVHLPAEACQGMDAAHL
ATLASEAKRQAKAVPGYSLHLIEAA*
AnnotationID:502GeneID:493
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 17:05:59
Gene Name:
Confidence Code:3
GeneProduct:putative EAL domain/GGDEF domain protein
Cell Localization:()
Synonyms:PA3258
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2200
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO57352.1| (AE016870) EAL domain/GGDEF domain protein [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 590

 Score =  845 bits (2183), Expect = 0.0
 Identities = 423/581 (72%), Positives = 485/581 (83%)

Structural Features:
COG2200, Rtn, FOG: EAL domain [Signal transduction mechanisms]
CD-Length = 256 residues,  98.8% aligned
Score =  201 bits (512), Expect = 2e-52
Identities = 95/256 (37%), Positives = 133/256 (51%), Gaps = 6/256 (2%)
Genomic Context:
Comment:
ReferenceID:14145
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18131
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32285
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:493_cdd.html
URL:
Homologs By Global Alignment
Gene ID:493

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
858 PA3258_tr translation of PA3258 601 99.16 99.66 0 3061.0
35837 gb|AAG06646.1|AE004748_4 (AE004748) hypothetical protein PA3258 [Pseudomonas aeruginosa PAO1] 601 99.00 99.66 0 3058.0
35838 gb|AAO57352.1| (AE016870) EAL domain/GGDEF domain protein [Pseudomonas syringae pv. tomato str. DC3000] 609 69.45 79.63 27 2183.0
35839 gb|AAN53636.1|AE015502_10 (AE015502) conserved hypothetical protein [Shewanella oneidensis MR-1] 612 40.84 58.33 39 1154.0
35840 gb|AAQ59007.1| (AE016914) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] 627 37.63 53.58 51 1064.0
GC ORFID: 43495How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3258Glimmer Score:
Start: 3051807Stop: 3053612
Length: 1806
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3258 translation of PA3258Homolog Bit Score 1183.0
Other Homologs: psyr_15may02_Scaffold16_revised_gene2683 (ORF: BLASTX 825.0), t_PA3258 (ORF: GLIMMER)
GC ORF Sequence
GTGAAATACGGGGCCGGTTGCACAACCGGCCCTTTTTCATTGCGACGAGAGCGTTCCATGACCGTCACCGAG
CAGTTGAGCGCCCTGGACAGCATCCTGGCCCACGGCGACCTGCACTGCCTGTTCCAGCCCATCCTCTCGCTT
TCCGAACGGCGTCTGGTCGGCTACGAAGCGCTAACCCGCGGTCCGTCCAACAGCCCGCTGCACTCGCCCCTG
GCGTTGTTCGCCGTGGCCCGCCAATGCGGACGGCTGAGCGAACTGGAACTGCTCTGCCGACAACGCGCCTTC
AGCCGCTTCCGCGACATCCAGGGCGACGCCATGCTGTTCCTCAACGTCTCTCCGGAGTCCCTCCTCGAAGCC
GGCCATCCGCCCGGCCGCACCCTGCAATTGCTGCAACAGCTGGGGATCTCGCCGAACCGGGTGGTGATCGAA
CTGACCGAACAGACCCCCATCGACGACTTCGACCTGCTCGACACCGCGCTGCACCACTATCGCGCCATGGGC
TTCTCCATCGCCCTCGACGACCTCGGCGCTGGCTACTCCAGCCTGCGCCTGTGGTCGGAACTGCGTCCGGAC
TACGTGAAGATCGACCGCCACTTCGTCGACGGCATCCACCTGGACACCGTGAAACGCGAGTTCGTCGGCTCC
ATCCTGAAGATGGCCCGAGCCTCTCGCGCCCAGGTCATCGCCGAAGGCATCGAACTGCCCGAGGAACTGGCG
GTGCTTAGCGAGATGGGGGTTGACCTGGTGCAAGGCTATCTGTTCGGCCGCCCGCAGGAACACCCGGCAAGC
GACGTACAACAGATGCTGCCCAGCGCTGGCGCCCCCAGCCAGTCTTCCAGCGACGAGCATGGCGACCTGCGT
GCGCTGCTGCTGGAACAGCGCGCGGTCGACGTTCGCACCTCGACCCAGGAAGTGGTGGAAATCTTCCGCCGC
CAGGCCAACCTGAACTCCCTGGCGATCCTCGACGAAGAGGGGCGTCCCATCGGCATCGTCCATCGCCACGCG
CTCACCGACGCCTTGCTCCGGCCCTTCGCCTGCGACCTGTTCCTGCGCAAGCCGATCAGCCGCCTGATGAGC
GACGATTTTCTCGCCGCGGAACTCGGCCAGACCCTGCAGCAGGTCAGCCGCCTGCTGACCAGCCGCGCACGC
CAGCGTATCGAGGAAGATTTCATCGTCACCCGCGGCGGGCACTATGCGGGCATGGGCCGGGTGATCGACGTG
CTCAGGCTGATCACCGAGGAAAAGCTCCAGCAGGCGCGGCACGCCAATCCGCTCACCTTGCTTCCCGGCAAC
GTGCCGATCCAGCAATGCCTCGAACGCCTGCTGCAACAAAGGCGCGAGGCGGTGATCTGCTACATCGACATC
GACAGCTTCAAACCCTTCAACGATCTCTACGGCTACGCCCGCGGCGACGAGGTCCTGCTGTGCCTGGCACAG
TGCCTGAGCGAACGGATCGACCCGGGCAGCGACTTCGTCGGCCATATCGGCGGTGACGACTTCATGCTGGTG
CTCGGCCCCGAGGACTGGCGCACACGGATCGACCGGTTGCTGGAAACCTTCCAGAGCCAATGCCGGCGCTTC
TACAGCCGCGAGCACCTGGAAGCCGGCTGTTTCGTTGCGCACAACCGCCATGGCCAGCGCGAGGAGTACCCG
CTGCTGTCATTGTCCGTCGGCGTGGTGCATCTACCGGCCGAAGCCTGTCAGGGAATGGATGCCGCGCACCTG
GCGACGCTGGCCTCCGAGGCCAAGCGCCAGGCCAAGGCGGTGCCAGGCTACAGCCTGCACCTGATCGAGGCC
GCCTGA