ViewGene
Locus Name:
GeneID:
Location:

GeneID:4928
TrivialName: PA14_08250
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08250
PAO1 Ortholog Locus:PA0637
Sequence Length:342
Protein Length:113
Start: 705239
Stop: 705580
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04026.1|AE004499_5 (AE004499) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 113/113 (100%), Positives = 113/113 (100%)
Sequence:
ATGGCTGATCTGGAACGCTTTACCTGGGACATCTCGATCGATTCCGCCGGCCAGGCGAACCAACTGGTACGC
CAGGTGCAGTACGGCGGCGGCTACAGCCAGGCGCTCGGCGACGGGCTGAACAACCTCAGCGAGACCTGGCAG
GTTTCGCGTACCGGCGATCTCGCGCTGATCGGCCCGATCCGCGATTTCCTCAAGCGCCACGGCGGCTACCGC
TCGTTCCTCTGGACCTTGCCCACTGGCGAACCGGTGCGGGTGCGCGCCCAGGGCTGGCAATTGCGACCGCGC
GGCAACGGCGTGTTCACCCTGAACACCACCTTCCAGCAAGTCTTCAATCCGTGA
Translation:
MADLERFTWDISIDSAGQANQLVRQVQYGGGYSQALGDGLNNLSETWQVSRTGDLALIGPIRDFLKRHGGYR
SFLWTLPTGEPVRVRAQGWQLRPRGNGVFTLNTTFQQVFNP*
AnnotationID:4933GeneID:4928
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 13:01:20
Gene Name:
Confidence Code:3
GeneProduct:putative phage minor tail protein
Cell Localization:()
Synonyms:PA0637
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam05939
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAA83176.1| (AB030825) PRF32~similar to M gene of lambda and gene17 of N15:
           tail formation [Pseudomonas aeruginosa]
          Length = 113

 Score =  237 bits (605), Expect = 8e-63
 Identities = 113/113 (100%), Positives = 113/113 (100%)








 
Structural Features:
pfam05939, Phage minor tail protein
CD-Length = 109 residues, 100.0% aligned
Score =  130 bits (327), Expect = 5e-32
Identities = 52/110 (47%), Positives = 64/110 (58%), Gaps = 2/110 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9856




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26997




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34594




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4928_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4928
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7331
                           PA0637_tr
                           translation of PA0637
                           113
                           99.99
                           99.99
                           0
                           605.0
     

     
     
190817
                           gb|AAG04026.1|AE004499_5
                           (AE004499) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           113
                           99.99
                           99.99
                           0
                           605.0
     

     
     
190818
                           dbj|BAA83176.1|
                           (AB030825) PRF32~similar to M gene of lambda and gene17 of N15: tail formation [Pseudomonas aeruginosa]
                           113
                           99.99
                           99.99
                           0
                           605.0
     

     






      

          
GC ORFID: 47930How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0637Glimmer Score: 

          
Start: 6506582Stop: 6506923

          
Length: 342


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0637 translation of PA0637Homolog Bit Score 237.0

          
Other Homologs:  t_PA0637 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCTGATCTGGAACGCTTTACCTGGGACATCTCGATCGATTCCGCCGGCCAGGCGAACCAACTGGTACGC 
CAGGTGCAGTACGGCGGCGGCTACAGCCAGGCGCTCGGCGACGGGCTGAACAACCTCAGCGAGACCTGGCAG 
GTTTCGCGTACCGGCGATCTCGCGCTGATCGGCCCGATCCGCGATTTCCTCAAGCGCCACGGCGGCTACCGC 
TCGTTCCTCTGGACCTTGCCCACTGGCGAACCGGTGCGGGTGCGCGCCCAGGGCTGGCAATTGCGACCGCGC 
GGCAACGGCGTGTTCACCCTGAACACCACCTTCCAGCAAGTCTTCAATCCGTGA