ViewGene

Locus Name:
GeneID:
Location:

GeneID:4927
TrivialName: PA14_07590
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07590
PAO1 Ortholog Locus:PA0582
Sequence Length:354
Protein Length:117
Start: 653893
Stop: 654246
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03971.1|AE004494_7 (AE004494) dihydroneopterin aldolase [Pseudomonas aeruginosa PAO1]
Identities = 117/117 (100%), Positives = 117/117 (100%)
Sequence:
GTGGACAGAGTTTTTATCGAAGGCTTGGAGGTCGATACCGTCATCGGCGTGTACGACTGGGAGCGCGGCATC
CGTCAGTGCCTGCGCCTGGACCTGACCCTGGGCTGGGACAACCGTCCGGCCGCTGCGGGCGATGATCTCGCC
CTGGCGCTGGACTATGCCGCGTTGTCCGAGCGGGTGCAGGAATTCGCCCGGGAATCGCATTTCCAGTTGGTG
GAAACCTTCGCCGAGCGCCTCGCCGAGGTACTGATGGGCGAGCGCGGCATTCCCTGGCTGCGCATCCGCGTG
ACCAAGCCCGGCGCGGTGCCGGCGGCCCGTGGCGTTGGCGTGGAGATCGAACGCGGATGTCGCTGA
Translation:
MDRVFIEGLEVDTVIGVYDWERGIRQCLRLDLTLGWDNRPAAAGDDLALALDYAALSERVQEFARESHFQLV
ETFAERLAEVLMGERGIPWLRIRVTKPGAVPAARGVGVEIERGCR*
AnnotationID:4932GeneID:4927
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 08:08:51
Gene Name:folB
Confidence Code:2
GeneProduct:dihydroneopterin aldolase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1539,cd00534,pfam02152
Secondary Functional Category(ies):central intermediary metabolism
EC Number:4.1.2.25
Status:ACTIVE
Pathway:
Homology:
>gb|AAO54084.1| (AE016857) dihydroneopterin aldolase [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 117

 Score =  194 bits (492), Expect = 1e-49
 Identities = 92/117 (78%), Positives = 103/117 (88%)

>gb|AAN66023.1|AE016231_6 (AE016775) dihydroneopterin aldolase [Pseudomonas putida KT2440]
          Length = 118

 Score =  184 bits (468), Expect = 6e-47
 Identities = 90/117 (76%), Positives = 101/117 (86%), Gaps = 1/117 (0%)

>gb|AAM38712.1| (AE012036) dihydroneopterin aldolase [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 118

 Score =  136 bits (342), Expect = 3e-32
 Identities = 66/114 (57%), Positives = 88/114 (77%)
Structural Features:
COG1539, FolB, Dihydroneopterin aldolase [Coenzyme metabolism]
CD-Length = 121 residues,  97.5% aligned
Score =  134 bits (340), Expect = 2e-33
Identities = 56/118 (47%), Positives = 70/118 (59%), Gaps = 1/118 (0%)

cd00534, DHNA_DHNTPE, Dihydroneopterin aldolase 
(DHNA) and 7,8-dihydroneopterin triphosphate epimerase domain (DHNTPE)
CD-Length = 118 residues, 100.0% aligned
Score =  118 bits (297), Expect = 2e-28
Identities = 49/118 (41%), Positives = 75/118 (63%), Gaps = 3/118 (2%)

pfam02152, FolB, Dihydroneopterin aldolase. 
CD-Length = 112 residues, 100.0% aligned
Score =  106 bits (266), Expect = 6e-25
Identities = 43/112 (38%), Positives = 69/112 (61%), Gaps = 1/112 (0%)
Genomic Context:
Comment:
ReferenceID:15216
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26995
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33871
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4927_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4927

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7330 PA0582_tr translation of PA0582 117 99.99 99.99 0 604.0
190790 gb|AAG03971.1|AE004494_7 (AE004494) dihydroneopterin aldolase [Pseudomonas aeruginosa PAO1] 117 99.14 99.99 0 601.0
190791 gb|AAO54084.1| (AE016857) dihydroneopterin aldolase [Pseudomonas syringae pv. tomato str. DC3000] 117 77.77 88.03 0 488.0
190792 gb|AAN66023.1|AE016231_6 (AE016775) dihydroneopterin aldolase [Pseudomonas putida KT2440] 118 75.42 85.59 1 464.0
190796 dbj|BAC93332.1| (AP005332) dihydroneopterin aldolase [Vibrio vulnificus YJ016] 119 55.46 68.06 2 322.0
GC ORFID: 47929How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0582Glimmer Score:
Start: 6455236Stop: 6455589
Length: 354
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0582 translation of PA0582Homolog Bit Score 237.0
Other Homologs: psyr_15may02_Scaffold6_revised_gene6676 (ORF: BLASTX 197.0), t_PA0582 (ORF: GLIMMER)
GC ORF Sequence
GTGGACAGAGTTTTTATCGAAGGCTTGGAGGTCGATACCGTCATCGGCGTGTACGACTGGGAGCGCGGCATC
CGTCAGTGCCTGCGCCTGGACCTGACCCTGGGCTGGGACAACCGTCCGGCCGCTGCGGGCGATGATCTCGCC
CTGGCGCTGGACTATGCCGCGTTGTCCGAGCGGGTGCAGGAATTCGCCCGGGAATCGCATTTCCAGTTGGTG
GAAACCTTCGCCGAGCGCCTCGCCGAGGTACTGATGGGCGAGCGCGGCATTCCCTGGCTGCGCATCCGCGTG
ACCAAGCCCGGCGCGGTGCCGGCGGCCCGTGGCGTTGGCGTGGAGATCGAACGCGGATGTCGCTGA