ViewGene
Locus Name:
GeneID:
Location:

GeneID:4926
TrivialName: PA14_20550
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20550
PAO1 Ortholog Locus:PA3367
Sequence Length:339
Protein Length:112
Start: 1768341
Stop: 1768003
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06755.1|AE004759_2 (AE004759) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 112/112 (100%), Positives = 112/112 (100%)
Sequence:
ATGAAATTCGGACTCTTCGCCTCGATCGCCCTCTTCCTCCTGTCGGTCTGCGCACTTCCGGCGCTGGCTGCC
AATAGCCCCTGCTCGGGAAAGAAAGGCGGTATCGCCGGTTGCGACGGCGATATCTTCCTCTGCAACGACGGC
TCCATCAGCGCCTCGAAGCGCAGTTGCGCGGCCTACTTCGGCAACGCCGGCGGACGTACCGGACAACCCGCC
GTACAGCGTCTGCAAGGCACGACGCAGGGCTGTGCCTGTGGCAGCGGCTCGTTCTGCACGGGCCCGCGCGGA
GGGGTGTACTGCCTGACGCCGGGCGGCAAGAAAAGCTATCGGAGAAAGTGA
Translation:
MKFGLFASIALFLLSVCALPALAANSPCSGKKGGIAGCDGDIFLCNDGSISASKRSCAAYFGNAGGRTGQPA
VQRLQGTTQGCACGSGSFCTGPRGGVYCLTPGGKKSYRRK*
AnnotationID:4931GeneID:4926
AnnotatorUID: diggins
Modification Date/Time: 2005-04-18 07:07:39
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA3367
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9852




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26993




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4926
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7329
                           PA3367_tr
                           translation of PA3367
                           112
                           99.99
                           99.99
                           0
                           604.0
     

     
     
190789
                           gb|AAG06755.1|AE004759_2
                           (AE004759) hypothetical protein PA3367 [Pseudomonas aeruginosa PAO1]
                           112
                           99.99
                           99.99
                           0
                           604.0
     

     






      

          
GC ORFID: 47928How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3367Glimmer Score: 

          
Start: 3185591Stop: 3185929

          
Length: 339


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3367 translation of PA3367Homolog Bit Score 237.0

          
Other Homologs:  t_PA3367 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAATTCGGACTCTTCGCCTCGATCGCCCTCTTCCTCCTGTCGGTCTGCGCACTTCCGGCGCTGGCTGCC 
AATAGCCCCTGCTCGGGAAAGAAAGGCGGTATCGCCGGTTGCGACGGCGATATCTTCCTCTGCAACGACGGC 
TCCATCAGCGCCTCGAAGCGCAGTTGCGCGGCCTACTTCGGCAACGCCGGCGGACGTACCGGACAACCCGCC 
GTACAGCGTCTGCAAGGCACGACGCAGGGCTGTGCCTGTGGCAGCGGCTCGTTCTGCACGGGCCCGCGCGGA 
GGGGTGTACTGCCTGACGCCGGGCGGCAAGAAAAGCTATCGGAGAAAGTGA