ViewGene
Locus Name:
GeneID:
Location:

GeneID:4925
TrivialName: PA14_44200
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44200
PAO1 Ortholog Locus:PA1568
Sequence Length:354
Protein Length:117
Start: 3933756
Stop: 3934109
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04957.1|AE004585_5 (AE004585) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 115/117 (98%), Positives = 117/117 (100%)
Sequence:
ATGCATATCGAACGCTTCGAAGTCGTCAAACGCCGGGCCGAAATGGCCCTGCACGGCAACACCCTCTACATC
GGCGGCCAGGTCGCCGACGATCCCAGCGGTGACATCCAGGACCAGACCCGCCAGGTCCTGGAGAACATCGAC
CGGCTGCTCCAGAGCGTCGGCAGCGACCGCGGCCAGGTGCTCTCGGTACGCATCCTGCTCGCCCACCGCGAG
GACTACGCCGGTCTCAACCAGGTCTGGGACCAGTGGTTTCCCGAAGGCCGGGCGCCGACCCGCGCCTGTAGC
CTGGCCGAGTTGATCGACCCGCGCTGGCGGGTGGAAATGATCGTCGTCGCCGCCCGTCCGCAGTGA
Translation:
MHIERFEVVKRRAEMALHGNTLYIGGQVADDPSGDIQDQTRQVLENIDRLLQSVGSDRGQVLSVRILLAHRE
DYAGLNQVWDQWFPEGRAPTRACSLAELIDPRWRVEMIVVAARPQ*
AnnotationID:4930GeneID:4925
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 12:12:04
Gene Name:
Confidence Code:3
GeneProduct:putative Endoribonuclease L-PSP
Cell Localization:()
Synonyms:PA1568
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0251,pfam01042
Secondary Functional Category(ies):translation, ribosomal structure and biogenesis
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO53656.1| (AE016856) endoribonuclease L-PSP family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 117

 Score =  104 bits (259), Expect = 1e-22
 Identities = 51/117 (43%), Positives = 79/117 (67%), Gaps = 1/117 (0%)






 
Structural Features:
COG0251, TdcF, Putative translation initiation inhibitor, yjgF family 
[Translation, ribosomal structure and biogenesis] 
CD-Length = 130 residues,  94.6% aligned
Score =  111 bits (278), Expect = 3e-26
Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 6/123 (4%)

pfam01042, Ribonuc_L-PSP, Endoribonuclease L-PSP. 
CD-Length = 120 residues,  85.0% aligned
Score = 94.1 bits (234), Expect = 4e-21
Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 6/102 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9850




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26991




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37234




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4925_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4925
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7327
                           PA1568_tr
                           translation of PA1568
                           117
                           98.29
                           99.99
                           0
                           604.0
     

     
     
190776
                           gb|AAG04957.1|AE004585_5
                           (AE004585) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           117
                           98.29
                           99.99
                           0
                           604.0
     

     
     
190783
                           gb|AAG08688.1|AE004943_4
                           (AE004943) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           118
                           44.06
                           64.40
                           2
                           260.0
     

     
     
190781
                           emb|CAE31179.1|
                           (BX640439) conserved hypothetical protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           118
                           44.06
                           59.32
                           3
                           259.0
     

     
     
7328
                           PA5303_tr
                           translation of PA5303
                           118
                           44.06
                           64.40
                           2
                           260.0
     

     






      

          
GC ORFID: 47927How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1568Glimmer Score: 

          
Start: 1020153Stop: 1019800

          
Length: 354


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1568 translation of PA1568Homolog Bit Score 237.0

          
Other Homologs:  t_PA5303 (ORF: BLASTX 103.0), psyr_15may02_Scaffold2_revised_gene3158 (ORF: BLASTX 102.0), t_PA1568 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCATATCGAACGCTTCGAAGTCGTCAAACGCCGGGCCGAAATGGCCCTGCACGGCAACACCCTCTACATC 
GGCGGCCAGGTCGCCGACGATCCCAGCGGTGACATCCAGGACCAGACCCGCCAGGTCCTGGAGAACATCGAC 
CGGCTGCTCCAGAGCGTCGGCAGCGACCGCGGCCAGGTGCTCTCGGTACGCATCCTGCTCGCCCACCGCGAG 
GACTACGCCGGTCTCAACCAGGTCTGGGACCAGTGGTTTCCCGAAGGCCGGGCGCCGACCCGCGCCTGTAGC 
CTGGCCGAGTTGATCGACCCGCGCTGGCGGGTGGAAATGATCGTCGTCGCCGCCCGTCCGCAGTGA