ViewGene
Locus Name:
GeneID:
Location:

GeneID:4924
TrivialName: PA14_52340
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52340
PAO1 Ortholog Locus:PA0921
Sequence Length:360
Protein Length:119
Start: 4644697
Stop: 4644338
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04310.1|AE004526_5 (AE004526) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 117/119 (98%), Positives = 117/119 (98%)
Sequence:
ATGATCCAGGCGGGCATTCATGTCGGCGCCGGAGTCGTGCTGGGCGTGGCCGCTGGATGGTGGCTGGGGGAT
TGGGAACAGTCGTTGCAGGTCAAGGATTCGGTGGCGCGGGTCGATTGCCTGTTGTACGGCGTCCTGCTGGTG
GTGTTGCTCCGCCACGACGGTTGGTTGCGCCGCCTGGGCCAACTGGGCCTGGGGCTGTTCTGCGGTTCCCTG
CTGGTCTATTCAGTGAATCCGGCAAGCCTGTTCGCTGCGAAAGAGTCCTGGAGCCTGGCGCGGATCTCCATG
CGGGCCTTCGGTCCGCTGGTGATGCTGGTCGTGGGGATGGCCTGCGCGCGCCTGGCACACGAGTTGCGCTGA
Translation:
MIQAGIHVGAGVVLGVAAGWWLGDWEQSLQVKDSVARVDCLLYGVLLVVLLRHDGWLRRLGQLGLGLFCGSL
LVYSVNPASLFAAKESWSLARISMRAFGPLVMLVVGMACARLAHELR*
AnnotationID:4929GeneID:4924
AnnotatorUID: danlee
Modification Date/Time: 2004-05-06 16:04:10
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0921
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9848




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26989




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4924
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7326
                           PA0921_tr
                           translation of PA0921
                           119
                           98.31
                           98.31
                           0
                           604.0
     

     
     
190775
                           gb|AAG04310.1|AE004526_5
                           (AE004526) hypothetical protein PA0921 [Pseudomonas aeruginosa PAO1]
                           119
                           98.31
                           98.31
                           0
                           604.0
     

     






      

          
GC ORFID: 47926How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0921Glimmer Score: 

          
Start: 309210Stop: 309569

          
Length: 360


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0921 translation of PA0921Homolog Bit Score 237.0

          
Other Homologs:  t_PA0921 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCCAGGCGGGCATTCATGTCGGCGCCGGAGTCGTGCTGGGCGTGGCCGCTGGATGGTGGCTGGGGGAT 
TGGGAACAGTCGTTGCAGGTCAAGGATTCGGTGGCGCGGGTCGATTGCCTGTTGTACGGCGTCCTGCTGGTG 
GTGTTGCTCCGCCACGACGGTTGGTTGCGCCGCCTGGGCCAACTGGGCCTGGGGCTGTTCTGCGGTTCCCTG 
CTGGTCTATTCAGTGAATCCGGCAAGCCTGTTCGCTGCGAAAGAGTCCTGGAGCCTGGCGCGGATCTCCATG 
CGGGCCTTCGGTCCGCTGGTGATGCTGGTCGTGGGGATGGCCTGCGCGCGCCTGGCACACGAGTTGCGCTGA