ViewGene
Locus Name:
GeneID:
Location:

GeneID:4922
TrivialName: PA14_07330
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07330
PAO1 Ortholog Locus:PA0563
Sequence Length:354
Protein Length:117
Start: 630463
Stop: 630110
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03952.1|AE004492_11 (AE004492) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 117/117 (100%), Positives = 117/117 (100%)
Sequence:
ATGGAATGGTTTCTGAAATGCGTGAAGGAACACTACTTCGACTTCAACGGGCGTGCCCGTCGCAAGGAATAC
TGGATGTTCACCCTGGTGAACATCATCATCTCCGTCGCGCTGAGCGTCGTGCTCGGCCTGATCAGTGAAAAG
CTCCTGCCGATCGCCAATCTCTACTCGCTCGCCGTGCTGCTGCCGGCCCTGGGCGTCACCGCCCGGCGTCTG
CACGACATCAACAAGAGCGGCTGGTGGATGCTGATCGCGCTGATCCCGATCGTCGGCCTGTACCTGATCTAC
CTGCTGGCCAAGGACAGCGACGCCGGCCAGAACCAGTACGGCCAGAACCCGAAAGGCATCGCCTGA
Translation:
MEWFLKCVKEHYFDFNGRARRKEYWMFTLVNIIISVALSVVLGLISEKLLPIANLYSLAVLLPALGVTARRL
HDINKSGWWMLIALIPIVGLYLIYLLAKDSDAGQNQYGQNPKGIA*
AnnotationID:4927GeneID:4922
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 07:07:48
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0563
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3152
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAM72805.1| (AE012913) aminopeptidase C, putative [Chlorobium tepidum TLS]
          Length = 124

 Score =  115 bits (288), Expect = 5e-26
 Identities = 61/123 (49%), Positives = 81/123 (65%), Gaps = 7/123 (5%)

>gb|AAG58237.1|AE005540_2 (AE005540) putative cytochrome [Escherichia coli O157:H7 EDL933]
          Length = 118

 Score =  105 bits (261), Expect = 6e-23
 Identities = 49/115 (42%), Positives = 75/115 (65%), Gaps = 2/115 (1%)






 
Structural Features:
COG3152, Predicted membrane protein
CD-Length = 125 residues,  98.4% aligned
Score =  106 bits (267), Expect = 5e-25
Identities = 51/124 (41%), Positives = 71/124 (57%), Gaps = 8/124 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9844




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26985




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33867




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4922_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4922
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7324
                           PA0563_tr
                           translation of PA0563
                           117
                           99.99
                           99.99
                           0
                           607.0
     

     
     
190766
                           gb|AAG03952.1|AE004492_11
                           (AE004492) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           117
                           99.99
                           99.99
                           0
                           607.0
     

     
     
190767
                           gb|AAM72805.1|
                           (AE012913) aminopeptidase C, putative [Chlorobium tepidum TLS]
                           127
                           48.03
                           64.56
                           13
                           298.0
     

     
     
190773
                           gb|AAP08970.1|
                           (AE017004) Integral membrane protein [Bacillus cereus ATCC 14579]
                           122
                           41.80
                           61.47
                           7
                           249.0
     

     
     
190769
                           gb|AAG58237.1|AE005540_2
                           (AE005540) putative cytochrome [Escherichia coli O157:H7 EDL933]
                           119
                           41.17
                           63.86
                           3
                           259.0
     

     






      

          
GC ORFID: 47924How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0563Glimmer Score: 

          
Start: 6431805Stop: 6431452

          
Length: 354


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0563 translation of PA0563Homolog Bit Score 238.0

          
Other Homologs:  t_PA0563 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAATGGTTTCTGAAATGCGTGAAGGAACACTACTTCGACTTCAACGGGCGTGCCCGTCGCAAGGAATAC 
TGGATGTTCACCCTGGTGAACATCATCATCTCCGTCGCGCTGAGCGTCGTGCTCGGCCTGATCAGTGAAAAG 
CTCCTGCCGATCGCCAATCTCTACTCGCTCGCCGTGCTGCTGCCGGCCCTGGGCGTCACCGCCCGGCGTCTG 
CACGACATCAACAAGAGCGGCTGGTGGATGCTGATCGCGCTGATCCCGATCGTCGGCCTGTACCTGATCTAC 
CTGCTGGCCAAGGACAGCGACGCCGGCCAGAACCAGTACGGCCAGAACCCGAAAGGCATCGCCTGA