ViewGene
Locus Name:
GeneID:
Location:

GeneID:4921
TrivialName: PA14_02260
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02260
PAO1 Ortholog Locus:PA0179
Sequence Length:366
Protein Length:121
Start: 203319
Stop: 202954
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03569.1|AE004455_10 (AE004455) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
Identities = 121/121 (100%), Positives = 121/121 (100%)
Sequence:
ATGGGCAAACCGATTCTGATCGTCGACGACTCGGCGTCTATCCGCCAGATGCTGAGCTTCACCCTGAAGTCC
GCCGGCTACGAGGTAGACGAGGCCGCGGACGGCAAGGAAGGCCTCGGCAAGGCCCAGAGCAAGAGCTACAGC
CTGGTGTTCACCGACCAGAACATGCCGAACATGGACGGCCTATCGCTGATCCGCAGCCTGCGTAACCTGGCC
GGCTACCGCAGCGTGCCGATCCTCATGCTGACCACCGAATCGAGCGACGCGATGAAGCAGCAGGGACGCAGC
GCCGGCGCCACCGGCTGGCTGGTGAAGCCGTTCGACCCGCCGAAACTGCTCGAAGTGACGCGCAAGGTCCTG
CCCTGA
Translation:
MGKPILIVDDSASIRQMLSFTLKSAGYEVDEAADGKEGLGKAQSKSYSLVFTDQNMPNMDGLSLIRSLRNLA
GYRSVPILMLTTESSDAMKQQGRSAGATGWLVKPFDPPKLLEVTRKVLP*
AnnotationID:4926GeneID:4921
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 08:08:03
Gene Name:
Confidence Code:3
GeneProduct:putative two-component response regulator
Cell Localization:()
Synonyms:cheY
Cell Localization Confidence Code:5
MolecularFunction:putative chemotaxis response regulator
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00156,smart00448
Secondary Functional Category(ies):chemotaxis
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN55167.1|AE015654_4 (AE015654) chemotaxis protein CheY [Shewanella oneidensis MR-1]
          Length = 121

 Score =  149 bits (376), Expect = 3e-36
 Identities = 72/120 (60%), Positives = 90/120 (75%)

>gb|AAM36766.1| (AE011825) chemotaxis response regulator [Xanthomonas axonopodis
           pv. citri str. 306]
          Length = 121

 Score =  143 bits (361), Expect = 2e-34
 Identities = 70/120 (58%), Positives = 91/120 (75%)

>gb|AAO08067.1|AE016812_49 (AE016812) FOG: CheY-like receiver [Vibrio vulnificus CMCP6]
          Length = 119

 Score =  135 bits (339), Expect = 6e-32
 Identities = 64/116 (55%), Positives = 87/116 (75%)








 
Structural Features:
cd00156, REC, Signal receiver domain; originally thought to be unique to bacteria
CD-Length = 113 residues, 100.0% aligned
Score =  114 bits (286), Expect = 4e-27
Identities = 47/115 (40%), Positives = 61/115 (53%), Gaps = 2/115 (1%)

smart00448, REC, cheY-homologous receiver domain
CD-Length = 113 residues,  97.3% aligned
Score =  106 bits (267), Expect = 5e-25
Identities = 44/112 (39%), Positives = 62/112 (55%), Gaps = 3/112 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9842




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26983




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33547




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4921_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4921
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7323
                           PA0179_tr
                           translation of PA0179
                           121
                           99.99
                           99.99
                           0
                           606.0
     

     
     
190733
                           gb|AAG03569.1|AE004455_10
                           (AE004455) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
                           121
                           99.99
                           99.99
                           0
                           606.0
     

     
     
190734
                           gb|AAQ61104.2|
                           (AE016922) chemotaxis protein cheY [Chromobacterium violaceum ATCC 12472]
                           121
                           71.07
                           79.33
                           0
                           426.0
     

     
     
190735
                           gb|AAN55167.1|AE015654_4
                           (AE015654) chemotaxis protein CheY [Shewanella oneidensis MR-1]
                           121
                           59.50
                           74.38
                           0
                           374.0
     

     
     
190736
                           gb|AAM36766.1|
                           (AE011825) chemotaxis response regulator [Xanthomonas axonopodis pv. citri str. 306]
                           121
                           57.85
                           75.20
                           0
                           359.0
     

     






      

          
GC ORFID: 47923How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0179Glimmer Score: 

          
Start: 6004658Stop: 6004293

          
Length: 366


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0179 translation of PA0179Homolog Bit Score 238.0

          
Other Homologs:  psyr_15may02_Scaffold15_revised_gene2544 (ORF: BLASTX 133.0), t_PA0179 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGGCAAACCGATTCTGATCGTCGACGACTCGGCGTCTATCCGCCAGATGCTGAGCTTCACCCTGAAGTCC 
GCCGGCTACGAGGTAGACGAGGCCGCGGACGGCAAGGAAGGCCTCGGCAAGGCCCAGAGCAAGAGCTACAGC 
CTGGTGTTCACCGACCAGAACATGCCGAACATGGACGGCCTATCGCTGATCCGCAGCCTGCGTAACCTGGCC 
GGCTACCGCAGCGTGCCGATCCTCATGCTGACCACCGAATCGAGCGACGCGATGAAGCAGCAGGGACGCAGC 
GCCGGCGCCACCGGCTGGCTGGTGAAGCCGTTCGACCCGCCGAAACTGCTCGAAGTGACGCGCAAGGTCCTG 
CCCTGA