ViewGene
Locus Name:
GeneID:
Location:

GeneID:4920
TrivialName: PA14_00580
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00580
PAO1 Ortholog Locus:PA0046
Sequence Length:354
Protein Length:117
Start: 59735
Stop: 60088
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03436.1|AE004444_5 (AE004444) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 117/117 (100%), Positives = 117/117 (100%)
Sequence:
ATGAGCAAGACGATCACATGGACGGCGGCGCTGCTGGGGAGCATGGCGCTGGCCGGGTGCAGCGGACCGAAG
ACGCTGTACCAGTGGGAGGGCTACCAGGCCCAGGTCCACGAATACTTCAAGGGTGAATCCAAGGAGGCCCAG
GCGCAGGCGCTGGAAGCCGACCTCGAGAAGATCCGGGCGAAGAACGGCGCGGTGCCGCCGGGCTACCACGCC
CAGCTGGGGCTGCTCTATTCCAGCATCGGCAAGGACGACCAGATGGTCCGCGAGTTCGAGACCGAGAAGGCG
CTGTTTCCCGAGTCGGCGACCTACATGGACTTCCTCCTGAACAACGCCCGTGGAGGTGCCCGTTGA
Translation:
MSKTITWTAALLGSMALAGCSGPKTLYQWEGYQAQVHEYFKGESKEAQAQALEADLEKIRAKNGAVPPGYHA
QLGLLYSSIGKDDQMVREFETEKALFPESATYMDFLLNNARGGAR*
AnnotationID:4925GeneID:4920
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 15:03:33
Gene Name:
Confidence Code:3
GeneProduct:putative lipoprotein
Cell Localization:()
Synonyms:PA0046
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD17825.1| (AL646080) PROBABLE LIPOPROTEIN [Ralstonia solanacearum]
          Length = 125

 Score =  163 bits (412), Expect = 2e-40

>emb|CAC92215.1| (AJ414154) putative lipoprotein [Yersinia pestis CO92]
          Length = 118

 Score =  105 bits (261), Expect = 6e-23
 Identities = 52/114 (45%), Positives = 75/114 (65%), Gaps = 2/114 (1%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9840




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26981




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33410




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4920_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4920
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7322
                           PA0046_tr
                           translation of PA0046
                           117
                           99.99
                           99.99
                           0
                           608.0
     

     
     
190727
                           gb|AAG03436.1|AE004444_5
                           (AE004444) hypothetical protein PA0046 [Pseudomonas aeruginosa PAO1]
                           117
                           99.99
                           99.99
                           0
                           608.0
     

     
     
190728
                           emb|CAD17825.1|
                           (AL646080) PROBABLE LIPOPROTEIN [Ralstonia solanacearum]
                           125
                           65.60
                           77.60
                           8
                           414.0
     

     
     
190729
                           gb|AAO54776.1|
                           (AE016860) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           125
                           57.60
                           68.80
                           8
                           369.0
     

     
     
190730
                           emb|CAE16338.1|
                           (BX571872) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           123
                           43.90
                           64.22
                           10
                           271.0
     

     






      

          
GC ORFID: 47922How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0046Glimmer Score: 

          
Start: 5861072Stop: 5861425

          
Length: 354


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0046 translation of PA0046Homolog Bit Score 238.0

          
Other Homologs:  t_PA0046 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCAAGACGATCACATGGACGGCGGCGCTGCTGGGGAGCATGGCGCTGGCCGGGTGCAGCGGACCGAAG 
ACGCTGTACCAGTGGGAGGGCTACCAGGCCCAGGTCCACGAATACTTCAAGGGTGAATCCAAGGAGGCCCAG 
GCGCAGGCGCTGGAAGCCGACCTCGAGAAGATCCGGGCGAAGAACGGCGCGGTGCCGCCGGGCTACCACGCC 
CAGCTGGGGCTGCTCTATTCCAGCATCGGCAAGGACGACCAGATGGTCCGCGAGTTCGAGACCGAGAAGGCG 
CTGTTTCCCGAGTCGGCGACCTACATGGACTTCCTCCTGAACAACGCCCGTGGAGGTGCCCGTTGA