ViewGene

Locus Name:
GeneID:
Location:

GeneID:492
TrivialName: PA14_14630
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14630
PAO1 Ortholog Locus:PA3821
Sequence Length:1863
Protein Length:620
Start: 1247545
Stop: 1249407
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07208.1|AE004799_14 (AE004799) secretion protein SecD [Pseudomonas aeruginosa PAO1]
Identities = 618/620 (99%), Positives = 620/620 (100%)
Sequence:
ATGCTCAACAAGTATCCTCTGTGGAAATATCTGCTGATCCTGGCGGTCCTCGCCGTCGGGTTCATCTATTCC
GCACCCAACCTCTACCCGGACGACCCGGCGGTGCAGATCAGCGGCGCCAGCACGGCGCTGCAGGTCACCCAG
GCCGACGTCGACCGCGCTGCCAAGGCGCTGACCGACGCCGGTATCGCGGTGAAGGCCAACAGCCTGTCGAAG
AAGGGCGGCCTGATCCGCCTGGTCAAGCAGGACGACCAGCTTCCCGCCAAGGAAGTGGTGCGCCGGACCCTG
GGCGACGACTACGTGGTGGCGCTGAACCTGGCCCAGACCACTCCCGAGTGGCTGCGCAAGCTGGGCGGCAGC
CCAATGAAGCTCGGCCTGGACCTGTCCGGCGGCGTGCACTTCCTGCTGGAAGTGGACATGGACAAGGCGGTC
GATGCCCGCCTGAAGGTCTATGAAAGCGAAGTGAAGAGCCTGCTGCGCAAGGAGCGCGTGCGCTACCGCAGC
CTGCCGATCCAGGATCGCGCGATCCAGCTCGGCTTCACCGACAGCGAATCCCTGGACAAGGCGCGCAGCCTG
ATCGCCAAGGACTTCCGCGATTTCGAGGTCGTGCCCGAAGAGCGCAACGGCCTGCAGGTCCTGCGTGTCGCC
CTGACCCAGGCCAAACTGGCGGAAATCCGCGAGTACTCCATCAAGCAGAACCTCACCACCGTCCGCAACCGG
GTCAACGAGCTGGGCGTATCCGAGCCGCTGGTGCAGCGCCAGGGCGCCAATCGCATCGTGGTCGAGCTGCCG
GGCGTGCAGGACACCGCGGAAGCCAAGCGAATCCTCGGCAAGACCGCCAACCTCGAATTCCGCCTGGCCGCC
GAGCCGGACGCCCTGAAGTCCGCCACCGAGACCTTCGAGTTCCGCGAGCCGCGCCGTCCGCCGGTGCCGCTG
GAGCGCGGGGTGATCATCACCGGCGACCAGGTCACCGACGCCAGCGCCAGTTTCGACGAGAACGGCCGCCCG
CAGGTGAACATCCGCCTGGATGGCCACGGCGGCGAGCTGATGAACCGCGCCACCCGCAACAACGTCGGCCGC
AGCATGGCGGTGGTGTTCATCGAGCAGAAGCCGGTGACCCGCTACACCAAGCAGATGGTCGATGGCGTCGAG
AAGGAGGTCGCGGTTCCGGCGTTCAAGGAAGAGAAGCAGATCATCAGTCTGGCGACCATCCAGTCGCCGCTG
GGCAACCAGTTCCGCATCACCGGCCTCGATGGCCCGGGCGAGTCCTCCGAACTGGCCCTGCTGCTGCGTGCC
GGCGGCCTGGCTGCACCGATGTACTTCGCCGAAGAACGCACCATCGGCCCGAGCCTGGGGGCGGACAACATC
GCCAAGGGTGTCGATGCGTCGCTCTGGGGCATGCTCTTCGTATCGCTGTTCATCATCGTCATCTACCGTTTC
TTCGGCGTGATCGCCACCGTTGCGCTGGCCTTCAACATGGTCATGCTGGTAGCGCTGATGTCGATCCTCGGC
GCGACCCTGACCCTGCCGGGCATCGCCGGTATCGTGCTGACCATGGGCATGGCGGTGGACGCCAACGTGCTG
ATCTTCTCGCGGATACGCGAGGAGCTGGCCAATGGCATGTCGGTCCAGAGGGCGATCCACGAAGGCTTCAAC
CGTGCCTTCACCGCGATCCTCGACGCCAACCTGACCTCGCTGCTGGTCGGCGGCATCCTCTACGCCATGGGC
ACCGGCCCGGTGAAAGGATTTGCCGTGACCATGTCGCTCGGCATCATCACCTCGATGTTCACGGCCATCATG
GTCACCCGCGCAATGGTCAACCTGATCTTCGGCGGGCGTGACTTCAAGAAGCTGTGGATCTAA
Translation:
MLNKYPLWKYLLILAVLAVGFIYSAPNLYPDDPAVQISGASTALQVTQADVDRAAKALTDAGIAVKANSLSK
KGGLIRLVKQDDQLPAKEVVRRTLGDDYVVALNLAQTTPEWLRKLGGSPMKLGLDLSGGVHFLLEVDMDKAV
DARLKVYESEVKSLLRKERVRYRSLPIQDRAIQLGFTDSESLDKARSLIAKDFRDFEVVPEERNGLQVLRVA
LTQAKLAEIREYSIKQNLTTVRNRVNELGVSEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLAA
EPDALKSATETFEFREPRRPPVPLERGVIITGDQVTDASASFDENGRPQVNIRLDGHGGELMNRATRNNVGR
SMAVVFIEQKPVTRYTKQMVDGVEKEVAVPAFKEEKQIISLATIQSPLGNQFRITGLDGPGESSELALLLRA
GGLAAPMYFAEERTIGPSLGADNIAKGVDASLWGMLFVSLFIIVIYRFFGVIATVALAFNMVMLVALMSILG
ATLTLPGIAGIVLTMGMAVDANVLIFSRIREELANGMSVQRAIHEGFNRAFTAILDANLTSLLVGGILYAMG
TGPVKGFAVTMSLGIITSMFTAIMVTRAMVNLIFGGRDFKKLWI*
AnnotationID:501GeneID:492
AnnotatorUID: diggins
Modification Date/Time: 2005-04-24 15:03:05
Gene Name:secD
Confidence Code:2
GeneProduct:protein-export membrane protein SecD
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0342
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO54936.1| (AE016860) protein-export membrane protein SecD [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 622

 Score = 1013 bits (2619), Expect = 0.0
 Identities = 521/622 (83%), Positives = 569/622 (91%), Gaps = 2/622 (0%)

>gb|AAN78996.1|AE016756_179 (AE016756) Protein-export membrane protein secD [Escherichia coli
           CFT073]
          Length = 615

 Score =  552 bits (1422), Expect = e-156
 Identities = 300/630 (47%), Positives = 435/630 (69%), Gaps = 25/630 (3%)
Structural Features:
COG0342, SecD, Preprotein translocase subunit SecD 
[Intracellular trafficking and secretion]
CD-Length = 506 residues,  97.0% aligned
Score =  470 bits (1211), Expect = 4e-133
Identities = 257/530 (48%), Positives = 334/530 (63%), Gaps = 49/530 (9%)
Genomic Context:
Comment:
ReferenceID:987
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18129
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31736
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:429_cdd.html
URL:
ReferenceID:34307
Author/Investigator(s): Gardel C, Johnson K, Jacq A, Beckwith J.
Title: The secD locus of E.coli codes for two membrane proteins required for protein export.
PubMed: 2170107
MedLine:
Source:
EMBO J. 1990 Oct;9(10):3209-16.

Erratum in:
    * EMBO J. 1990 Dec;9(12):4205-6.

Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2170107
ReferenceID:34308
Author/Investigator(s): Pogliano KJ, Beckwith J.
Title: Genetic and molecular characterization of the Escherichia coli secD operon and its products.
PubMed: 7507921
MedLine:
Source:
J Bacteriol. 1994 Feb;176(3):804-14.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=7507921
ReferenceID:34309
Author/Investigator(s): Bolhuis A, Broekhuizen CP, Sorokin A, van Roosmalen ML, Venema G, Bron S, Quax WJ, van Dijl JM.
Title: SecDF of Bacillus subtilis, a molecular Siamese twin required for the efficient secretion of proteins.
PubMed: 9694879
MedLine:
Source:
J Biol Chem. 1998 Aug 14;273(33):21217-24.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9694879
ReferenceID:34310
Author/Investigator(s): Vemulapalli R, Duncan AJ, Boyle SM, Sriranganathan N, Toth TE, Schurig GG.
Title: Cloning and sequencing of yajC and secD homologs of Brucella abortus and demonstration of immune responses to YajC in mice vaccinated with B. abortus RB51.
PubMed: 9826342
MedLine:
Source:
Infect Immun. 1998 Dec;66(12):5684-91.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9826342
Homologs By Global Alignment
Gene ID:492

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
857 PA3821_tr translation of PA3821 620 99.67 99.99 0 3065.0
35789 gb|AAG07208.1|AE004799_14 (AE004799) secretion protein SecD [Pseudomonas aeruginosa PAO1] 620 99.67 99.99 0 3065.0
35790 gb|AAO54936.1| (AE016860) protein-export membrane protein SecD [Pseudomonas syringae pv. tomato str. DC3000] 622 83.76 91.47 2 2621.0
35791 gb|AAN66460.1|AE016275_5 (AE016777) protein-export membrane protein SecD [Pseudomonas putida KT2440] 621 82.12 90.17 2 2547.0
35792 gb|AAF93908.1| (AE004160) protein-export membrane protein SecD [Vibrio cholerae O1 biovar eltor str. N16961] 629 50.55 67.72 21 1542.0
GC ORFID: 43494How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3821Glimmer Score:
Start: 3706393Stop: 3704531
Length: 1863
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA3821 translation of PA3821Homolog Bit Score 1185.0
Other Homologs: psyr_15may02_Scaffold3_revised_gene4510 (ORF: BLASTX 1014.0), t_PA3821 (ORF: GLIMMER)
GC ORF Sequence
ATGCTCAACAAGTATCCTCTGTGGAAATATCTGCTGATCCTGGCGGTCCTCGCCGTCGGGTTCATCTATTCC
GCACCCAACCTCTACCCGGACGACCCGGCGGTGCAGATCAGCGGCGCCAGCACGGCGCTGCAGGTCACCCAG
GCCGACGTCGACCGCGCTGCCAAGGCGCTGACCGACGCCGGTATCGCGGTGAAGGCCAACAGCCTGTCGAAG
AAGGGCGGCCTGATCCGCCTGGTCAAGCAGGACGACCAGCTTCCCGCCAAGGAAGTGGTGCGCCGGACCCTG
GGCGACGACTACGTGGTGGCGCTGAACCTGGCCCAGACCACTCCCGAGTGGCTGCGCAAGCTGGGCGGCAGC
CCAATGAAGCTCGGCCTGGACCTGTCCGGCGGCGTGCACTTCCTGCTGGAAGTGGACATGGACAAGGCGGTC
GATGCCCGCCTGAAGGTCTATGAAAGCGAAGTGAAGAGCCTGCTGCGCAAGGAGCGCGTGCGCTACCGCAGC
CTGCCGATCCAGGATCGCGCGATCCAGCTCGGCTTCACCGACAGCGAATCCCTGGACAAGGCGCGCAGCCTG
ATCGCCAAGGACTTCCGCGATTTCGAGGTCGTGCCCGAAGAGCGCAACGGCCTGCAGGTCCTGCGTGTCGCC
CTGACCCAGGCCAAACTGGCGGAAATCCGCGAGTACTCCATCAAGCAGAACCTCACCACCGTCCGCAACCGG
GTCAACGAGCTGGGCGTATCCGAGCCGCTGGTGCAGCGCCAGGGCGCCAATCGCATCGTGGTCGAGCTGCCG
GGCGTGCAGGACACCGCGGAAGCCAAGCGAATCCTCGGCAAGACCGCCAACCTCGAATTCCGCCTGGCCGCC
GAGCCGGACGCCCTGAAGTCCGCCACCGAGACCTTCGAGTTCCGCGAGCCGCGCCGTCCGCCGGTGCCGCTG
GAGCGCGGGGTGATCATCACCGGCGACCAGGTCACCGACGCCAGCGCCAGTTTCGACGAGAACGGCCGCCCG
CAGGTGAACATCCGCCTGGATGGCCACGGCGGCGAGCTGATGAACCGCGCCACCCGCAACAACGTCGGCCGC
AGCATGGCGGTGGTGTTCATCGAGCAGAAGCCGGTGACCCGCTACACCAAGCAGATGGTCGATGGCGTCGAG
AAGGAGGTCGCGGTTCCGGCGTTCAAGGAAGAGAAGCAGATCATCAGTCTGGCGACCATCCAGTCGCCGCTG
GGCAACCAGTTCCGCATCACCGGCCTCGATGGCCCGGGCGAGTCCTCCGAACTGGCCCTGCTGCTGCGTGCC
GGCGGCCTGGCTGCACCGATGTACTTCGCCGAAGAACGCACCATCGGCCCGAGCCTGGGGGCGGACAACATC
GCCAAGGGTGTCGATGCGTCGCTCTGGGGCATGCTCTTCGTATCGCTGTTCATCATCGTCATCTACCGTTTC
TTCGGCGTGATCGCCACCGTTGCGCTGGCCTTCAACATGGTCATGCTGGTAGCGCTGATGTCGATCCTCGGC
GCGACCCTGACCCTGCCGGGCATCGCCGGTATCGTGCTGACCATGGGCATGGCGGTGGACGCCAACGTGCTG
ATCTTCTCGCGGATACGCGAGGAGCTGGCCAATGGCATGTCGGTCCAGAGGGCGATCCACGAAGGCTTCAAC
CGTGCCTTCACCGCGATCCTCGACGCCAACCTGACCTCGCTGCTGGTCGGCGGCATCCTCTACGCCATGGGC
ACCGGCCCGGTGAAAGGATTTGCCGTGACCATGTCGCTCGGCATCATCACCTCGATGTTCACGGCCATCATG
GTCACCCGCGCAATGGTCAACCTGATCTTCGGCGGGCGTGACTTCAAGAAGCTGTGGATCTAA