Modification Date/Time: 2006-04-06 13:01:23
Missense Discrepancy: FALSE
Comments:Homology: gb|AAG07208.1| AE004799_14 (AE004799) secretion protein SecD [Pseudomonas aeruginosa PAO1]
Identities = 618/620 (99%), Positives = 620/620 (100%)
Sequence:
ATGCTCAACAAGTATCCTCTGTGGAAATATCTGCTGATCCTGGCGGTCCTCGCCGTCGGGTTCATCTATTCC
GCACCCAACCTCTACCCGGACGACCCGGCGGTGCAGATCAGCGGCGCCAGCACGGCGCTGCAGGTCACCCAG
GCCGACGTCGACCGCGCTGCCAAGGCGCTGACCGACGCCGGTATCGCGGTGAAGGCCAACAGCCTGTCGAAG
AAGGGCGGCCTGATCCGCCTGGTCAAGCAGGACGACCAGCTTCCCGCCAAGGAAGTGGTGCGCCGGACCCTG
GGCGACGACTACGTGGTGGCGCTGAACCTGGCCCAGACCACTCCCGAGTGGCTGCGCAAGCTGGGCGGCAGC
CCAATGAAGCTCGGCCTGGACCTGTCCGGCGGCGTGCACTTCCTGCTGGAAGTGGACATGGACAAGGCGGTC
GATGCCCGCCTGAAGGTCTATGAAAGCGAAGTGAAGAGCCTGCTGCGCAAGGAGCGCGTGCGCTACCGCAGC
CTGCCGATCCAGGATCGCGCGATCCAGCTCGGCTTCACCGACAGCGAATCCCTGGACAAGGCGCGCAGCCTG
ATCGCCAAGGACTTCCGCGATTTCGAGGTCGTGCCCGAAGAGCGCAACGGCCTGCAGGTCCTGCGTGTCGCC
CTGACCCAGGCCAAACTGGCGGAAATCCGCGAGTACTCCATCAAGCAGAACCTCACCACCGTCCGCAACCGG
GTCAACGAGCTGGGCGTATCCGAGCCGCTGGTGCAGCGCCAGGGCGCCAATCGCATCGTGGTCGAGCTGCCG
GGCGTGCAGGACACCGCGGAAGCCAAGCGAATCCTCGGCAAGACCGCCAACCTCGAATTCCGCCTGGCCGCC
GAGCCGGACGCCCTGAAGTCCGCCACCGAGACCTTCGAGTTCCGCGAGCCGCGCCGTCCGCCGGTGCCGCTG
GAGCGCGGGGTGATCATCACCGGCGACCAGGTCACCGACGCCAGCGCCAGTTTCGACGAGAACGGCCGCCCG
CAGGTGAACATCCGCCTGGATGGCCACGGCGGCGAGCTGATGAACCGCGCCACCCGCAACAACGTCGGCCGC
AGCATGGCGGTGGTGTTCATCGAGCAGAAGCCGGTGACCCGCTACACCAAGCAGATGGTCGATGGCGTCGAG
AAGGAGGTCGCGGTTCCGGCGTTCAAGGAAGAGAAGCAGATCATCAGTCTGGCGACCATCCAGTCGCCGCTG
GGCAACCAGTTCCGCATCACCGGCCTCGATGGCCCGGGCGAGTCCTCCGAACTGGCCCTGCTGCTGCGTGCC
GGCGGCCTGGCTGCACCGATGTACTTCGCCGAAGAACGCACCATCGGCCCGAGCCTGGGGGCGGACAACATC
GCCAAGGGTGTCGATGCGTCGCTCTGGGGCATGCTCTTCGTATCGCTGTTCATCATCGTCATCTACCGTTTC
TTCGGCGTGATCGCCACCGTTGCGCTGGCCTTCAACATGGTCATGCTGGTAGCGCTGATGTCGATCCTCGGC
GCGACCCTGACCCTGCCGGGCATCGCCGGTATCGTGCTGACCATGGGCATGGCGGTGGACGCCAACGTGCTG
ATCTTCTCGCGGATACGCGAGGAGCTGGCCAATGGCATGTCGGTCCAGAGGGCGATCCACGAAGGCTTCAAC
CGTGCCTTCACCGCGATCCTCGACGCCAACCTGACCTCGCTGCTGGTCGGCGGCATCCTCTACGCCATGGGC
ACCGGCCCGGTGAAAGGATTTGCCGTGACCATGTCGCTCGGCATCATCACCTCGATGTTCACGGCCATCATG
GTCACCCGCGCAATGGTCAACCTGATCTTCGGCGGGCGTGACTTCAAGAAGCTGTGGATCTAA
Translation:
MLNKYPLWKYLLILAVLAVGFIYSAPNLYPDDPAVQISGASTALQVTQADVDRAAKALTDAGIAVKANSLSK
KGGLIRLVKQDDQLPAKEVVRRTLGDDYVVALNLAQTTPEWLRKLGGSPMKLGLDLSGGVHFLLEVDMDKAV
DARLKVYESEVKSLLRKERVRYRSLPIQDRAIQLGFTDSESLDKARSLIAKDFRDFEVVPEERNGLQVLRVA
LTQAKLAEIREYSIKQNLTTVRNRVNELGVSEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLAA
EPDALKSATETFEFREPRRPPVPLERGVIITGDQVTDASASFDENGRPQVNIRLDGHGGELMNRATRNNVGR
SMAVVFIEQKPVTRYTKQMVDGVEKEVAVPAFKEEKQIISLATIQSPLGNQFRITGLDGPGESSELALLLRA
GGLAAPMYFAEERTIGPSLGADNIAKGVDASLWGMLFVSLFIIVIYRFFGVIATVALAFNMVMLVALMSILG
ATLTLPGIAGIVLTMGMAVDANVLIFSRIREELANGMSVQRAIHEGFNRAFTAILDANLTSLLVGGILYAMG
TGPVKGFAVTMSLGIITSMFTAIMVTRAMVNLIFGGRDFKKLWI*
AnnotationID:501 GeneID:492
Modification Date/Time:
2005-04-24 15:03:05
GeneProduct: protein-export membrane protein SecD
Cell Localization Confidence Code: 5
Functional Category: (19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code: 5
Secondary Functional Category(ies):
Homology: >gb|AAO54936.1| (AE016860) protein-export membrane protein SecD [Pseudomonas
syringae pv. tomato str. DC3000]
Length = 622
Score = 1013 bits (2619), Expect = 0.0
Identities = 521/622 (83%), Positives = 569/622 (91%), Gaps = 2/622 (0%)
>gb|AAN78996.1| AE016756_179 (AE016756) Protein-export membrane protein secD [Escherichia coli
CFT073]
Length = 615
Score = 552 bits (1422), Expect = e-156
Identities = 300/630 (47%), Positives = 435/630 (69%), Gaps = 25/630 (3%)
Structural Features: COG0342 , SecD, Preprotein translocase subunit SecD
[Intracellular trafficking and secretion]
CD-Length = 506 residues, 97.0% aligned
Score = 470 bits (1211), Expect = 4e-133
Identities = 257/530 (48%), Positives = 334/530 (63%), Gaps = 49/530 (9%)