ViewGene
Locus Name:
GeneID:
Location:

GeneID:4919
TrivialName: PA14_60540
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60540
PAO1 Ortholog Locus:PA4575
Sequence Length:342
Protein Length:113
Start: 5395367
Stop: 5395026
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07963.1|AE004871_3 (AE004871) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 113/113 (100%), Positives = 113/113 (100%)
Sequence:
ATGCCGCGTAACCTCTGCCTCATCCGCCCTTGTCTGGGGCTGACCACGCGAATCGAATGCGTGGTCAGGCCG
CTGGCCGGAGAGAACGGACTCTGGACCCTGCTTTGCGCCGCCGGCATGTCCGGCTCCCAGCCTTCGGCGATC
AAGGCCCAGGGCCCCTTCCACGGACCGCTGGTGGCCGAAGGGGTGTTGCAGGCGATTGCAGACTGCCTGGCC
CAGCAAGGCTATATCGAAGCCGTCGACCCGCCGATCTGGCGCCTGCACCTGCAGGGCGAACTGCGCCGACTC
AATGGCGAACGACGGCCGCATGTCGGCGACTACCTGTTTCGCCCGGAATCCTGA
Translation:
MPRNLCLIRPCLGLTTRIECVVRPLAGENGLWTLLCAAGMSGSQPSAIKAQGPFHGPLVAEGVLQAIADCLA
QQGYIEAVDPPIWRLHLQGELRRLNGERRPHVGDYLFRPES*
AnnotationID:4924GeneID:4919
AnnotatorUID: diggins
Modification Date/Time: 2006-01-18 21:09:19
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4575
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9838




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26979




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4919
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7321
                           PA4575_tr
                           translation of PA4575
                           113
                           99.99
                           99.99
                           0
                           608.0
     

     
     
190724
                           gb|AAG07963.1|AE004871_3
                           (AE004871) hypothetical protein PA4575 [Pseudomonas aeruginosa PAO1]
                           113
                           99.99
                           99.99
                           0
                           608.0
     

     
     
190725
                           gb|AAN66306.1|AE016259_4
                           (AE016776) conserved hypothetical protein [Pseudomonas putida KT2440]
                           113
                           69.02
                           76.99
                           1
                           408.0
     

     
     
190726
                           gb|AAO58030.1|
                           (AE016872) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           113
                           51.32
                           64.60
                           4
                           285.0
     

     






      

          
GC ORFID: 47921How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4575Glimmer Score: 

          
Start: 4659047Stop: 4658706

          
Length: 342


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4575 translation of PA4575Homolog Bit Score 238.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5415 (ORF: BLASTX 116.0), t_PA4575 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGCGTAACCTCTGCCTCATCCGCCCTTGTCTGGGGCTGACCACGCGAATCGAATGCGTGGTCAGGCCG 
CTGGCCGGAGAGAACGGACTCTGGACCCTGCTTTGCGCCGCCGGCATGTCCGGCTCCCAGCCTTCGGCGATC 
AAGGCCCAGGGCCCCTTCCACGGACCGCTGGTGGCCGAAGGGGTGTTGCAGGCGATTGCAGACTGCCTGGCC 
CAGCAAGGCTATATCGAAGCCGTCGACCCGCCGATCTGGCGCCTGCACCTGCAGGGCGAACTGCGCCGACTC 
AATGGCGAACGACGGCCGCATGTCGGCGACTACCTGTTTCGCCCGGAATCCTGA