ViewGene
Locus Name:
GeneID:
Location:

GeneID:4918
TrivialName: PA14_08950
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08950
PAO1 Ortholog Locus:PA4253
Sequence Length:369
Protein Length:122
Start: 764184
Stop: 764552
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07641.1|AE004841_19 (AE004841) 50S ribosomal protein L14 [Pseudomonas aeruginosa PAO1]
Identities = 122/122 (100%), Positives = 122/122 (100%)
Sequence:
ATGATTCAGACTCAATCCATGCTCGATGTCGCTGACAACAGCGGCGCGCGTCGTGTGATGTGCATCAAGGTG
CTCGGCGGTTCCCACCGCCGTTACGCCGGCATCGGCGACATCATCAAGGTCACCGTCAAGGAAGCGATTCCG
CGCGGCAAAGTGAAGAAGGGCCAGGTCATGACTGCCGTGGTCGTTCGCACCAAGCACGGCGTGCGTCGTACC
GACGGTTCCATCATCCGCTTCGACGGCAACGCCGCCGTCCTGCTGAACAACAAGCAGGAGCCGATCGGCACC
CGTATCTTTGGGCCAGTGACTCGTGAACTCCGTACCGAGAAGTTCATGAAGATCGTCTCGCTCGCCCCCGAA
GTGCTGTAA
Translation:
MIQTQSMLDVADNSGARRVMCIKVLGGSHRRYAGIGDIIKVTVKEAIPRGKVKKGQVMTAVVVRTKHGVRRT
DGSIIRFDGNAAVLLNNKQEPIGTRIFGPVTRELRTEKFMKIVSLAPEVL*
AnnotationID:4923GeneID:4918
AnnotatorUID: diggins
Modification Date/Time: 2005-04-03 11:11:13
Gene Name:rplN
Confidence Code:2
GeneProduct:50S ribosomal protein L14
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00238
Secondary Functional Category(ies):translation, ribosomal structure and biogenesis
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54178.1| (AE016858) ribosomal protein L14 [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 122

 Score =  235 bits (600), Expect = 3e-62
 Identities = 120/122 (98%), Positives = 121/122 (99%)

>gb|AAN66094.1|AE016238_12 (AE016775) ribosomal protein L14 [Pseudomonas putida KT2440]
          Length = 122

 Score =  235 bits (600), Expect = 3e-62
 Identities = 120/122 (98%), Positives = 121/122 (99%)

>gb|AAP19371.1| (AE016992) 50S ribosomal subunit protein L14 [Shigella flexneri 2a
           str. 2457T]
          Length = 123

 Score =  208 bits (530), Expect = 4e-54
 Identities = 105/123 (85%), Positives = 114/123 (92%), Gaps = 1/123 (0%)






 
Structural Features:
pfam00238, Ribosomal_L14, Ribosomal protein L14p/L23e.
CD-Length = 122 residues, 100.0% aligned
Score =  169 bits (429), Expect = 9e-44
Identities = 84/122 (68%), Positives = 98/122 (80%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9836




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26977




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36536




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4918_cdd.html


    		




 
URL:

















    ReferenceID:36728




  
Author/Investigator(s):
        Cerretti DP, Dean D, Davis GR, Bedwell DM, Nomura M.





  
Title:
        The spc ribosomal protein operon of Escherichia coli: sequence and cotranscription of the ribosomal protein genes and a protein export gene.




  
PubMed:
        6222285


MedLine:
        




    
Source:
Nucleic Acids Res. 1983 May 11;11(9):2599-616.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=6222285









           
Homologs By Global Alignment 

           

       



     
Gene ID:4918
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7320
                           PA4253_tr
                           translation of PA4253
                           122
                           99.99
                           99.99
                           0
                           608.0
     

     
     
190568
                           gb|AAG07641.1|AE004841_19
                           (AE004841) 50S ribosomal protein L14 [Pseudomonas aeruginosa PAO1]
                           122
                           99.99
                           99.99
                           0
                           608.0
     

     
     
190569
                           gb|AAO54178.1|
                           (AE016858) ribosomal protein L14 [Pseudomonas syringae pv. tomato str. DC3000]
                           122
                           98.36
                           99.18
                           0
                           600.0
     

     
     
190570
                           gb|AAN66094.1|AE016238_12
                           (AE016775) ribosomal protein L14 [Pseudomonas putida KT2440]
                           122
                           98.36
                           99.18
                           0
                           600.0
     

     
     
190579
                           gb|AAM35865.1|
                           (AE011728) 50S ribosomal protein L14 [Xanthomonas axonopodis pv. citri str. 306]
                           122
                           87.70
                           92.62
                           0
                           529.0
     

     






      

          
GC ORFID: 47920How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4253Glimmer Score: 

          
Start: 4189755Stop: 4189387

          
Length: 369


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA4253 translation of PA4253Homolog Bit Score 238.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5195 (ORF: BLASTX 235.0), t_PA4253 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATTCAGACTCAATCCATGCTCGATGTCGCTGACAACAGCGGCGCGCGTCGTGTGATGTGCATCAAGGTG 
CTCGGCGGTTCCCACCGCCGTTACGCCGGCATCGGCGACATCATCAAGGTCACCGTCAAGGAAGCGATTCCG 
CGCGGCAAAGTGAAGAAGGGCCAGGTCATGACTGCCGTGGTCGTTCGCACCAAGCACGGCGTGCGTCGTACC 
GACGGTTCCATCATCCGCTTCGACGGCAACGCCGCCGTCCTGCTGAACAACAAGCAGGAGCCGATCGGCACC 
CGTATCTTTGGGCCAGTGACTCGTGAACTCCGTACCGAGAAGTTCATGAAGATCGTCTCGCTCGCCCCCGAA 
GTGCTGTAA