ViewGene
Locus Name:
GeneID:
Location:

GeneID:4915
TrivialName: PA14_39730
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39730
PAO1 Ortholog Locus:PA1917
Sequence Length:348
Protein Length:115
Start: 3540495
Stop: 3540842
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05305.1|AE004617_9 (AE004617) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 114/115 (99%), Positives = 114/115 (99%)
Sequence:
ATGAACCCTTCGCTCATCCGTCTCGACGACGAAAGTCCTTTCACCTCGCCCACGCCCGTCGGCCAGCCCCTG
GGCGAACCGGTAGCCCTGACCCGTACCGCGGCCCACCGCCCGCTCGCCGACGGCAACGGCGTGACCGGCATC
TGGGAATGCACCCCGGGGCGCTTCCGCCGACAGGTCGAGCATGCCGAGTACAGCTACATCGTCAGCGGTGAA
GGTCGCTTCACCCCGGACGAAGGCCAGGCCGTGGAGTTTCGCGCCGGCGACGCGCTCTATTTCGCCGCTGCC
ACCCAGGGCACCTGGGACATCCGCCAGACCGTGCGCAAGACCTACCTGATCTTCGACTGA
Translation:
MNPSLIRLDDESPFTSPTPVGQPLGEPVALTRTAAHRPLADGNGVTGIWECTPGRFRRQVEHAEYSYIVSGE
GRFTPDEGQAVEFRAGDALYFAAATQGTWDIRQTVRKTYLIFD*
AnnotationID:4920GeneID:4915
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 11:11:03
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1917
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9830




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26971




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37027




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4915_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4915
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7317
                           PA1917_tr
                           translation of PA1917
                           115
                           99.13
                           99.13
                           0
                           606.0
     

     
     
190411
                           gb|AAG05305.1|AE004617_9
                           (AE004617) hypothetical protein PA1917 [Pseudomonas aeruginosa PAO1]
                           115
                           99.13
                           99.13
                           0
                           606.0
     

     
     
190412
                           emb|CAE34326.1|
                           (BX640449) conserved hypothetical protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           117
                           47.00
                           59.82
                           6
                           262.0
     

     
     
190413
                           emb|CAE38812.1|
                           (BX640433) conserved hypothetical protein [Bordetella parapertussis]
                           117
                           47.00
                           59.82
                           6
                           260.0
     

     
     
190414
                           emb|CAE43376.1|
                           (BX640420) conserved hypothetical protein [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           117
                           47.00
                           59.82
                           6
                           260.0
     

     






      

          
GC ORFID: 47917How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1917Glimmer Score: 

          
Start: 1413416Stop: 1413069

          
Length: 348


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1917 translation of PA1917Homolog Bit Score 238.0

          
Other Homologs:  t_PA1917 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACCCTTCGCTCATCCGTCTCGACGACGAAAGTCCTTTCACCTCGCCCACGCCCGTCGGCCAGCCCCTG 
GGCGAACCGGTAGCCCTGACCCGTACCGCGGCCCACCGCCCGCTCGCCGACGGCAACGGCGTGACCGGCATC 
TGGGAATGCACCCCGGGGCGCTTCCGCCGACAGGTCGAGCATGCCGAGTACAGCTACATCGTCAGCGGTGAA 
GGTCGCTTCACCCCGGACGAAGGCCAGGCCGTGGAGTTTCGCGCCGGCGACGCGCTCTATTTCGCCGCTGCC 
ACCCAGGGCACCTGGGACATCCGCCAGACCGTGCGCAAGACCTACCTGATCTTCGACTGA