ViewGene
Locus Name:
GeneID:
Location:

GeneID:4912
TrivialName: PA14_08510
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08510
PAO1 Ortholog Locus:PA0665
Sequence Length:351
Protein Length:116
Start: 728221
Stop: 728571
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04054.1|AE004501_6 (AE004501) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 116/116 (100%), Positives = 116/116 (100%)
Sequence:
ATGAGCATCGAAACCTTCACCCCTACGCCCCTGCTCTTTACCCCAGGCGCAGCCAACAAGGTGAAGACGTTG
ATTGACGAAGAGGGCAATCCTCGCCTGAAACTGCGTGTGTTCGTCACCGGCGGCGGTTGCTCGGGCTTCCAG
TATGGCTTCACCTTCGACGAAGATATCGCCGATGACGATACCGTGATCGAGCGCGATGGCGTGGGCCTGGTG
GTGGACCCGATGAGCTTCCAGTACCTGGCGGGCTCGGAAGTCGACTACCAGGAAGGCCTGGAAGGTTCGAGG
TTCGTCATCAAGAACCCGAACGCCGCCACGACTTGCGGTTGCGGACAGTCGTTCTCGATCTGA
Translation:
MSIETFTPTPLLFTPGAANKVKTLIDEEGNPRLKLRVFVTGGGCSGFQYGFTFDEDIADDDTVIERDGVGLV
VDPMSFQYLAGSEVDYQEGLEGSRFVIKNPNAATTCGCGQSFSI*
AnnotationID:4917GeneID:4912
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 18:06:27
Gene Name:
Confidence Code:3
GeneProduct:HesB-like domain
Cell Localization:()
Synonyms:yadR
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam01521
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54147.1| (AE016858) HesB/YadR/YfhF family protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 116

 Score =  214 bits (546), Expect = 6e-56
 Identities = 100/116 (86%), Positives = 110/116 (94%)

>gb|AAN66063.1|AE016235_2 (AE016775) HesB/YadR/YfhF family protein [Pseudomonas putida
           KT2440]
          Length = 132

 Score =  210 bits (534), Expect = 1e-54
 Identities = 99/116 (85%), Positives = 108/116 (93%)








 
Structural Features:
pfam01521, HesB, HesB-like domain. 
CD-Length = 106 residues,  97.2% aligned
Score =  136 bits (345), Expect = 5e-34
Identities = 53/103 (51%), Positives = 67/103 (65%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9824




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26965




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34616




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4912_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4912
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7315
                           PA0665_tr
                           translation of PA0665
                           116
                           99.99
                           99.99
                           0
                           610.0
     

     
     
190359
                           gb|AAG04054.1|AE004501_6
                           (AE004501) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           116
                           99.99
                           99.99
                           0
                           610.0
     

     
     
190360
                           gb|AAO54147.1|
                           (AE016858) HesB/YadR/YfhF family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           116
                           86.20
                           94.82
                           0
                           546.0
     

     
     
190361
                           gb|AAN66063.1|AE016235_2
                           (AE016775) HesB/YadR/YfhF family protein [Pseudomonas putida KT2440]
                           132
                           75.00
                           81.81
                           16
                           534.0
     

     
     
190366
                           gb|AAK02542.1|
                           (AE006081) unknown [Pasteurella multocida]
                           116
                           68.96
                           76.72
                           2
                           429.0
     

     






      

          
GC ORFID: 47914How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0665Glimmer Score: 

          
Start: 6529564Stop: 6529914

          
Length: 351


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0665 translation of PA0665Homolog Bit Score 239.0

          
Other Homologs:  psyr_15may02_Scaffold14_revised_gene2368 (ORF: BLASTX 214.0), t_PA0665 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCATCGAAACCTTCACCCCTACGCCCCTGCTCTTTACCCCAGGCGCAGCCAACAAGGTGAAGACGTTG 
ATTGACGAAGAGGGCAATCCTCGCCTGAAACTGCGTGTGTTCGTCACCGGCGGCGGTTGCTCGGGCTTCCAG 
TATGGCTTCACCTTCGACGAAGATATCGCCGATGACGATACCGTGATCGAGCGCGATGGCGTGGGCCTGGTG 
GTGGACCCGATGAGCTTCCAGTACCTGGCGGGCTCGGAAGTCGACTACCAGGAAGGCCTGGAAGGTTCGAGG 
TTCGTCATCAAGAACCCGAACGCCGCCACGACTTGCGGTTGCGGACAGTCGTTCTCGATCTGA