ViewGene
Locus Name:
GeneID:
Location:

GeneID:4911
TrivialName: PA14_05330
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_05330
PAO1 Ortholog Locus:PA0409
Sequence Length:366
Protein Length:121
Start: 464831
Stop: 465196
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03798.1|AE004478_3 (AE004478) twitching motility protein PilH [Pseudomonas aeruginosa PAO1]
Identities = 121/121 (100%), Positives = 121/121 (100%)
Sequence:
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCAT
GGTCACCAGGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTG
GTCCTGATGGACATCGTCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAGTTGACCAAGGACGCCGAG
ACCAGCGCCATCCCGGTGATCATCGTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAG
GGCGCGCGCGACTACCTGACCAAGCCGGTGGACGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCG
GGCTGA
Translation:
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAE
TSAIPVIIVTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG*
AnnotationID:4916GeneID:4911
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 08:08:35
Gene Name:pilH
Confidence Code:1
GeneProduct:type IV pilus response regulator PilH
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:cheY homologue
Functional Category Confidence Code:5
COGs:cd00156
Secondary Functional Category(ies):motility and attachment
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58461.1| (AE016874) type IV pilus response regulator PilH [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 121

 Score =  226 bits (577), Expect = 1e-59
 Identities = 111/121 (91%), Positives = 117/121 (96%)

>gb|AAN70557.1|AE016698_5 (AE016792) type IV pili response regulator PilH [Pseudomonas putida
           KT2440]
          Length = 121

 Score =  193 bits (491), Expect = 1e-49
 Identities = 92/119 (77%), Positives = 106/119 (89%)

>gb|AAM36026.1| (AE011744) regulatory protein pilH family [Xanthomonas axonopodis
           pv. citri str. 306]
          Length = 128

 Score =  141 bits (356), Expect = 6e-34
 Identities = 67/118 (56%), Positives = 89/118 (75%)






 
Structural Features:
cd00156, REC, Signal receiver domain
CD-Length = 113 residues, 100.0% aligned
Score =  105 bits (264), Expect = 1e-24
Identities = 50/115 (43%), Positives = 73/115 (63%), Gaps = 2/115 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9822




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26963




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33736




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4911_cdd.html


    		




 
URL:

















    ReferenceID:35375




  
Author/Investigator(s):
        Darzins A.





  
Title:
        Characterization of a Pseudomonas aeruginosa gene cluster involved in pilus biosynthesis and twitching motility: sequence similarity to the chemotaxis proteins of enterics and the gliding bacterium Myxococcus xanthus.




  
PubMed:
        7908398


MedLine:
        




    
Source:
Mol Microbiol. 1994 Jan;11(1):137-53.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7908398









           
Homologs By Global Alignment 

           

       



     
Gene ID:4911
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7314
                           PA0409_tr
                           translation of PA0409
                           121
                           99.99
                           99.99
                           0
                           611.0
     

     
     
190343
                           gb|AAG03798.1|AE004478_3
                           (AE004478) twitching motility protein PilH [Pseudomonas aeruginosa PAO1]
                           121
                           99.99
                           99.99
                           0
                           611.0
     

     
     
190344
                           gb|AAA25950.1|
                           (L22036) cheY homologue [Pseudomonas aeruginosa]
                           121
                           99.99
                           99.99
                           0
                           611.0
     

     
     
190345
                           gb|AAO58461.1|
                           (AE016874) type IV pilus response regulator PilH [Pseudomonas syringae pv. tomato str. DC3000]
                           121
                           91.73
                           96.69
                           0
                           577.0
     

     
     
190346
                           gb|AAN70557.1|AE016698_5
                           (AE016792) type IV pili response regulator PilH [Pseudomonas putida KT2440]
                           121
                           76.03
                           87.60
                           0
                           491.0
     

     






      

          
GC ORFID: 47913How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0409Glimmer Score: 

          
Start: 6266173Stop: 6266538

          
Length: 366


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0409 translation of PA0409Homolog Bit Score 239.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3351 (ORF: BLASTX 222.0), t_PA0409 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCAT 
GGTCACCAGGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTG 
GTCCTGATGGACATCGTCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAGTTGACCAAGGACGCCGAG 
ACCAGCGCCATCCCGGTGATCATCGTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAG 
GGCGCGCGCGACTACCTGACCAAGCCGGTGGACGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCG 
GGCTGA