ViewGene
Locus Name:
GeneID:
Location:

GeneID:4910
TrivialName: PA14_11160
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11160
PAO1 Ortholog Locus:PA4076
Sequence Length:375
Protein Length:124
Start: 971986
Stop: 971612
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07463.1|AE004823_9 (AE004823) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 121/124 (97%), Positives = 121/124 (97%)
Sequence:
ATGACCCACAAACGTTTCTTCCTCGAACTGCTTCTCGCGCTGGTCGGCTATGCCGCTGCCGTTCTGATCAGC
GGCCAGTTGCTGGCAGGCACGGAACCGGGCGCCGGCCGGGTCTTCCTCGCCCTGCTGCCGGTGCCACCGATG
GTCGCCCTGGCGCTGGTGGTGATCCGTTACCTGCGGCGCCTCGACGAAATGGCCCGGCGCATCCATCTCGAA
GCCCTCGCCCTGGCCTTCGTCGGCACCGCCCTGCTCACCTTCGCCTACGGTTTCCTCGAAACCACCGGCTTT
CCGAAACTCTCGATGTTCTTCGTCTGGCCCCTGATGGGCGCGTTCTGGGCCATCGGCTGCGTCCTGGGACTG
AGGCGCTACGCATGA
Translation:
MTHKRFFLELLLALVGYAAAVLISGQLLAGTEPGAGRVFLALLPVPPMVALALVVIRYLRRLDEMARRIHLE
ALALAFVGTALLTFAYGFLETTGFPKLSMFFVWPLMGAFWAIGCVLGLRRYA*
AnnotationID:4915GeneID:4910
AnnotatorUID: diggins
Modification Date/Time: 2005-03-30 07:07:35
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4076
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9820




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26961




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4910
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7313
                           PA4076_tr
                           translation of PA4076
                           124
                           97.58
                           97.58
                           0
                           611.0
     

     
     
190342
                           gb|AAG07463.1|AE004823_9
                           (AE004823) hypothetical protein PA4076 [Pseudomonas aeruginosa PAO1]
                           124
                           97.58
                           97.58
                           0
                           611.0
     

     






      

          
GC ORFID: 47912How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4076Glimmer Score: 

          
Start: 3981951Stop: 3982325

          
Length: 375


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4076 translation of PA4076Homolog Bit Score 239.0

          
Other Homologs:  t_PA4076 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCCACAAACGTTTCTTCCTCGAACTGCTTCTCGCGCTGGTCGGCTATGCCGCTGCCGTTCTGATCAGC 
GGCCAGTTGCTGGCAGGCACGGAACCGGGCGCCGGCCGGGTCTTCCTCGCCCTGCTGCCGGTGCCACCGATG 
GTCGCCCTGGCGCTGGTGGTGATCCGTTACCTGCGGCGCCTCGACGAAATGGCCCGGCGCATCCATCTCGAA 
GCCCTCGCCCTGGCCTTCGTCGGCACCGCCCTGCTCACCTTCGCCTACGGTTTCCTCGAAACCACCGGCTTT 
CCGAAACTCTCGATGTTCTTCGTCTGGCCCCTGATGGGCGCGTTCTGGGCCATCGGCTGCGTCCTGGGACTG 
AGGCGCTACGCATGA